KEGG   Lactuca sativa (garden lettuce): 111881410
Entry
111881410         CDS       T05352                                 
Name
(RefSeq) autophagy-related protein 16
  KO
K17890  autophagy-related protein 16-1
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv04136  Autophagy - other
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04136 Autophagy - other
    111881410
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:lsv04131]
    111881410
   03029 Mitochondrial biogenesis [BR:lsv03029]
    111881410
Membrane trafficking [BR:lsv04131]
 Autophagy
  Autophagosome formation proteins
   Atg12 conjugation proteins
    111881410
 Others
  Specific organelles associated proteins
   Auto phagosome
    111881410
Mitochondrial biogenesis [BR:lsv03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Autophagy-related proteins
    111881410
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st EIF3I WD40_CDC20-Fz Beta-prop_EML_2 WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML ATG16 WDR90_beta-prop_4th Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_SCAP ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_SPT8 WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Beta-prop_HPS5 Beta-prop_IFT140_1st Beta-prop_WDR19_1st NBCH_WD40 Beta-prop_VPS8 Beta-prop_DCAF4 WDR54 eIF2A Beta-prop_Vps41 Beta-prop_RIG_1st Beta-prop_EIPR1 Beta-prop_WDR75_2nd PQQ_2 B-prop_COPA_B_2nd Cytochrom_D1 VPS8_N SHE3
Other DBs
NCBI-GeneID: 111881410
NCBI-ProteinID: XP_023733570
LinkDB
Position
1:complement(34480542..34482941)
AA seq 509 aa
MSEDEIAIEAIKHALKALRKRHLLEEGAHGPAIIALSKPIASQGSEWKDKAETLELELQQ
CYKAQSRLSEQLVVEVAESRAAKSLVQEKEALIPNLENDLSQARDECSRLAALLEEKTKG
LELLMGENKELKSQYEEMRTRAINAETENKTLIDRWMLQKMQDAERLNEANALYEDMLGK
LKASGLEQLARQQIDGVVRQSEEGAEYYVESTIPNTCNHRIPAHEGGCASILFENTSGKL
LTGGQDQTVKMWDTTTGQLTKTYHGCIGSILDLTLTNDNTCLIAASSSNNLYAWDTNTGR
VRHTLTGHKDKVCAVDVSRFSNRHVASSAYDRTIKIWDLNKGYCVNTIIFPSNCNTLSFT
PDGQTICSGHMDGHLRLWDMKSGKLLSEVAAHSLAVTSISLSRNGNTVLTSGRDNLHNLF
DTRTLEVMGTLRANGNRVASNWSRSCISADDNYVAAGSVDGVVHVWSIAKGNIVSTLKEH
TGSVLSCSWSGIGKPLATSDRNGIVCLWT
NT seq 1530 nt   +upstreamnt  +downstreamnt
atgtcagaagacgaaattgcgatagaagcaataaagcatgctttgaaggctcttcggaag
cggcatctgctggaggagggagctcacgggcctgctattatagctctttctaaacctatt
gcttcccagggttcagaatggaaggataaagcagaaactcttgaattggaacttcagcaa
tgttacaaagctcaatctcgattatctgagcagcttgtggtggaagtggccgaatctagg
gctgcaaaatctttagtccaggagaaagaagccttaattcctaatcttgaaaatgacctt
tctcaagcaagggatgaatgttctcgcttggctgcacttctagaggaaaagactaaaggc
ctagaattgcttatgggtgagaataaggaactgaaatctcaatatgaagaaatgagaact
agagctatcaatgcagagactgaaaacaagacattgattgatcggtggatgttgcagaaa
atgcaagatgctgaacgccttaacgaggcgaatgctttatatgaagacatgctaggtaag
ctcaaagccagtggactcgaacaacttgcaagacaacagatagacggtgtagtccgccaa
agtgaagaaggagctgaatactacgtggagtccaccataccgaacacctgcaaccaccgg
atccccgcccacgaaggtggctgtgcttcaatcctcttcgaaaacacttccgggaaatta
ctcaccggaggacaagaccaaactgttaaaatgtgggacacaacaaccggtcaactcact
aaaacctaccatggttgcatcggatccatccttgatctcacccttacaaatgacaacaca
tgtctcatagcagcaagcagttccaacaacttatacgcatgggacacaaatacgggtcgt
gttcgccacaccctcacaggtcataaagataaagtatgtgctgttgatgtcagcagattc
tctaatcgccatgtcgccagctcagcgtatgaccggacaatcaagatatgggatcttaac
aaagggtattgtgtcaacacgattatcttcccgagtaattgtaatactctgtctttcacg
ccagatggacagacgatttgttcgggacacatggatgggcatttaaggttgtgggacatg
aagagtgggaaattattgagtgaggttgcggcgcattctcttgctgtgacctctatttct
ctttctagaaatgggaacacggtgttgacaagtgggagggataatttgcataatttgttt
gatacaaggactcttgaagtgatggggacattgagggcgaatgggaatagagttgcttct
aattggagtagatcttgtattagtgctgatgataattatgttgctgctggatctgttgat
ggtgttgttcatgtctggtcgattgccaagggtaatatcgtcagtacacttaaggaacat
acgggttcggttttgtcttgttcttggagtggaattgggaaaccgttggctacatcggat
aggaatggaatcgtttgtttgtggacataa

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