Lactuca sativa (garden lettuce): 111882209
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Entry
111882209 CDS
T05352
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111882209
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsv03041
]
111882209
Enzymes [BR:
lsv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111882209
Spliceosome [BR:
lsv03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
111882209
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
AAA_22
DEAD
AAA_19
PWI
T2SSE
AAA_30
nSTAND3
SRP54
AAA_7
AAA_16
ABC_tran
Motif
Other DBs
NCBI-GeneID:
111882209
NCBI-ProteinID:
XP_023734330
LinkDB
All DBs
Position
6:complement(121108886..121115996)
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AA seq
1051 aa
AA seq
DB search
MGSDLKTWVSDRLMSLLGYSQPTLVQYLISLSKKASSPSDIFSNLKDMGVPSSNETRAFA
EEIFQKVEHKSSGSNLYRQQEEEAAMLARKQRSYKLLEGDDDDDDKNDHGGSVSVATQSK
KVDKHVKRFRKKSENQEDEDDDEGAGILKQERRVKQKASHDNSDESESEEERLRDQIERE
ELEQHLREKDAARTTKLTEKTLSKREEEEAIRRANALEDDDIGALRKVSRQEYLKKREQK
KLEEIKDDIEDEQYLFEGVKLTEAEQRELRYKKQIYDLVKKRSQEDDNVNEYRMPDAYDD
EGGVNQERRFSVAMERYRDSKDGDKMNPFAEQEAWEDHQIGKATLKYGSKNKKQADDYNY
VFEDQIEFIQGQVMGGVNVDVDEVNEEEYEKAVAKSAHEKLLADRKTLPVYPYRESLLKA
VEDHQVLVIVGETGSGKTTQIPQYLHEAGYTKRGMIGCTQPRRVAAMSVAARVSQEMNVK
LGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREFLGEPDLQSYSVVMVDEAHERTLSTDIL
FGLVKDIARFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRFPVEINYTKAPEADYL
DAAIVTALQIHVTQPPGDGDILVFLTGQEEIETAEEILKHRTRGLGSKIAELIICPIYAN
LPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFVKMKSYNPRTGMESLL
ITPISKASANQRAGRSGRTGPGKCFRLYTAYNYFNDLDDNTVPEIQRTNLANVVLSLKSL
GIHDLLNFDFMDPPPAEALLKALELLFALSALNKHGELTKIGRKMAEFPLDPMLSKMIVA
SDKYKCSDEIISIAAMLSIGSSIFYRPKDKQVHADNARLNFHMGNVGDHVALLKVYSSWK
ETNFSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIEIVSNPGDLEAIKKSITSGYFP
HSAKMQKNGSYRTVKHPQTVYIHPSSGLSQVLPRWVVYHELVLTTKEYMRQVSELKPEWL
VEIAPHYYQLKDVEDLASKKMPRGEGRASKD
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atggggagtgacttgaagacatgggtttcagacagattgatgtccctcttgggatattca
caacccacactggttcagtacctaattagtttatctaagaaagcatcatcaccttctgat
atatttagtaaccttaaggatatgggagtgccatcttcaaacgaaacacgtgcatttgct
gaagaaatctttcagaaagttgaacataagagttctggatcaaatctttataggcaacaa
gaagaggaggctgcaatgttagccaggaaacaaaggagttacaaacttttggagggagat
gatgatgatgatgataagaatgatcatggtggatctgtttctgttgccactcaatcgaaa
aaggttgataaacacgtgaaacgattcagaaagaagagtgaaaaccaagaagatgaagat
gatgatgagggagctggaatcttgaaacaagaaagaagggttaaacaaaaagcttctcat
gacaattcagatgagtctgagtctgaagaagaaagattgcgtgaccaaatagaacgagag
gaattggaacaacatctaagggaaaaagatgcagcaagaacaacaaagctgactgaaaag
acattgtccaagagggaggaagaagaggcaattaggagagccaatgccttggaagatgat
gacattggagctttaagaaaagtttcgaggcaagaatatctcaagaaaagggagcagaag
aaattggaggaaatcaaagatgatatagaagatgaacaatatttatttgagggtgtcaag
ctaactgaagctgaacaacgtgagctaagatacaagaagcaaatatatgatctagttaag
aagagatctcaagaggatgataatgttaatgagtatcgtatgcctgatgcttatgatgat
gaaggtggagtaaatcaagagagaagattctctgtagctatggaacgctacagagattca
aaagatggagataagatgaatccatttgctgaacaagaagcatgggaggatcatcagatc
ggaaaagcgacactaaaatatggatcaaagaacaaaaagcaagctgatgattataattat
gtgtttgaggatcagattgagttcatacagggacaagtcatgggtggtgtaaatgttgat
gttgatgaagtaaatgaagaggaatatgaaaaagctgtagcaaaatcagcacatgagaag
cttcttgcagacagaaaaactttacctgtgtacccgtatcgggaatctttgctgaaagct
gttgaagatcatcaggttcttgtgattgttggagaaactggttctgggaagaccactcag
ataccccaatatcttcatgaagctggatatacaaaacgcggaatgatagggtgcacacaa
ccaagacgagttgctgccatgagtgttgctgctagagtttctcaagaaatgaatgtcaaa
cttgggcatgaggttgggtattctatacgctttgaagattgtacttctgataaaacagtg
ctcaaatatatgactgatggcatgttactacgagaatttcttggtgaacctgatcttcaa
agttacagcgtggtgatggtggacgaggctcacgaaaggacattgtcaacagacatcttg
tttggtttagttaaggatatcgctcgatttcgacctgacctcaagctgctcatctcaagt
gccactttagatgcagaaaaattcagtgactatttcgattcagccccaattttcaaaatt
ccaggaagacgttttcccgttgaaataaactacacaaaagcaccagaagccgattacctg
gatgcagcaattgttacagctcttcaaatccatgtcacccagcccccaggagacggggac
attttggtctttttaaccggccaagaagaaatcgaaacagccgaagagatcctcaaacac
agaacccgtggtttaggtagcaaaatagccgaactaataatctgcccaatttacgcaaat
ctccctaccgaactccaagccaaaatcttcgaaccaactcccgaaggggcccgcaaagtc
gtcctcgccaccaacatcgccgaaacatcactaacaatcgacggaatcaaatacgtgatc
gaccccggattcgtgaaaatgaaatcctacaaccctcgaaccggaatggaatcattgctc
attaccccgatctccaaggcatccgcgaatcaacgggcgggtcgatccggaagaacgggc
cccgggaagtgtttccggttgtacaccgcgtacaattacttcaacgatctggatgacaac
actgttcccgagatccaacggactaatctcgcgaatgttgttttgagtttaaagagtctt
ggaatccatgacttgttgaattttgatttcatggacccacctcctgctgaggcgttgttg
aaagctttggagttgctgtttgctttgagcgcgcttaataaacatggggagttgactaaa
atcgggagaaaaatggcggagtttccacttgatcccatgttgtctaaaatgattgtggcg
tctgataagtataaatgttcggatgagattatttccattgctgctatgttgtctattgga
agctctattttttatcgccctaaggataaacaagttcatgctgataatgcaagattgaat
tttcatatgggtaatgttggggatcatgtcgcgttgcttaaggtttatagttcgtggaag
gaaacgaacttctctactcagtggtgttatgagaattacattcaggtgaggagtatgaaa
agggcacgggatattagagatcaactggaggggttattggaaagggttgaaattgaaata
gtgtcgaaccccggggacttggaagcaattaagaaatctataacttcaggatacttccca
cactcggccaagatgcaaaagaatggatcgtatagaactgtcaaacatccgcagactgtt
tatattcaccccagctctggtttatctcaggtacttcctaggtgggtggtataccatgaa
ctggttctgacaactaaggagtacatgcgacaggtcagcgagttgaaacccgagtggctt
gtggaaatagcgcctcattattatcaactaaaagatgttgaagatttggcttcaaagaaa
atgccacgtggggaaggacgtgcatctaaagattaa
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