KEGG   Lactuca sativa (garden lettuce): 111882327
Entry
111882327         CDS       T05352                                 
Name
(RefSeq) sm-like protein LSM1B
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    111882327
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lsv03019]
    111882327
Messenger RNA biogenesis [BR:lsv03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     111882327
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     111882327
SSDB
Motif
Pfam: LSM Hfq
Other DBs
NCBI-GeneID: 111882327
NCBI-ProteinID: XP_023734459
LinkDB
Position
1:46484634..46486441
AA seq 128 aa
MSWAGPEDVYLSTSLASYLDKKLLVLLRDGRKLLGILRSFDQFANAVLEGACERVIVGDL
YCDISLGLYVIRGENVVLIGELDLEKEELPPHMTRVSDAEIKRAQKVERDATDLKGSMRK
RMEFLDMD
NT seq 387 nt   +upstreamnt  +downstreamnt
atgtcgtgggcaggtccagaagatgtctatctatctacttctcttgcaagctatcttgac
aagaaacttctggtattgctaagagatggtaggaagctgttggggatacttcggtctttt
gatcaatttgctaatgctgttcttgaaggggcttgtgaacgagtaattgttggtgatcta
tattgtgatatctcactaggtctttatgtgatccgtggagagaatgttgttttgattggc
gagctggatctggagaaggaagaactccctcctcatatgacacgagtttctgatgctgag
ataaaaagggctcagaaagtggaaagggatgctacagatctgaagggttcaatgagaaaa
aggatggagtttcttgatatggactaa

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