Lactuca sativa (garden lettuce): 111882862
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Entry
111882862 CDS
T05352
Name
(RefSeq) transport inhibitor response 1-like protein Os04g0395600
KO
K14485
transport inhibitor response 1
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
111882862
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lsv04121
]
111882862
Ubiquitin system [BR:
lsv04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
111882862
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Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_4
LRR_At5g56370
LRR_6
F-box-like
LRR_8
F-box
Motif
Other DBs
NCBI-GeneID:
111882862
NCBI-ProteinID:
XP_023735001
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Position
1:complement(226137895..226142151)
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AA seq
593 aa
AA seq
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MDLNQKRTKTVDRVDPVDPAAVSPESTPVYPFPDEVLEPVLSLINSHKDRSSVSLVCKDW
YNAERWSRRHVFIGNCYSVSPEIVAGRFPQIRSVTLKGKPRFSDFNLVPEDWGADVHPWL
SVLAKAYPFLEELRLKRMAVSDESLEFLATNFPEFKALSLLSCDGFSTDGLKAIATHCRN
LTELDIQENGIDDLGGDWLSCFPETLTSLEVLNFASLNSEVDYNALEKLVTRCKSLRVLK
VNRNISLDQLQRLLLRAPQLTELGTGTFMQDLVTRSVSELEGSFGNCKNLLTISGLWDTT
TLFLPVIYPACAKLTFLNLSYATLRSVELAELLTHCKSLKRLWVLDTVGDSGLEAVGSCC
PLLEELRVFPADPFDQEVAGVTESGFVSVSRGCPKLHYVLYFCHQMTNAAVATIARNCPG
FTHFRLCIMNPGQPDYLTNEPMDEAFGAVVKTCPNLQRLAVSGRLTDLTFEYIGKYAKNL
ETLSVAFAGSSDLGLKYVLGGCPKLRKLEIRDCPFGNAALLSGLTKYESMRSLWMSACNL
TMNGCRVLAKEMPRLNVEVMKDEDSEDSQAHKVYVYRTVAGPRRDAPPFVLTL
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atggatctaaatcagaagcgaaccaaaacggttgaccgagtcgatccggttgatcctgct
gcggtgtcgccggaatcaactccggtgtatccgtttcctgacgaggttctagaaccggtg
ctctcgctgataaactctcacaaggaccgcagttccgtgtctctagtatgtaaagactgg
tacaacgctgagcggtggagcagacgtcatgtgtttatcggaaattgctactcggtgtcg
ccagagattgtagccgggaggtttcctcagattcggagcgtgaccttaaaggggaaaccg
aggttttcggatttcaatttagtaccggaggattggggagctgatgttcatccatggttg
agtgttctcgccaaagcgtatccattcctggaggagctgagactgaagagaatggcagtt
agcgacgagagtttggagtttctggcgacgaactttccagagtttaaagctctgtctcta
ttgagttgtgatggatttagtactgatgggttgaaagctattgctactcattgcaggaat
ttaacagagctagacatacaagagaatggaatcgatgatcttggtggggattggttaagt
tgcttcccagaaaccctaacctcattagaagtactaaattttgcaagcttaaacagtgaa
gttgactataatgcccttgagaagcttgttactaggtgtaaatcattaagggttttgaaa
gttaaccgaaacataagtctagatcaattgcaaagacttctattacgggccccacaacta
actgaacttggcacaggaacctttatgcaagatcttgtcacccgttcagtatctgagctc
gagggtagttttggaaattgtaaaaatctacttactatctccggtttatgggacactact
acacttttcttaccagtgatctaccctgcatgtgctaaacttacgtttttgaacttgagt
tatgcaactttaaggagtgtggaattagcagagcttcttactcattgtaaaagtctgaaa
cgcctttgggttcttgatactgtgggggacagtggtttagaagcggttggatcatgctgc
ccgttacttgaagaactgagagtcttcccggctgacccctttgaccaagaagtcgccggg
gtgaccgaatccggtttcgtctcggtttcccgtggctgcccgaaacttcattacgttctt
tacttctgccaccaaatgacaaatgccgccgtagccaccattgcccgaaactgcccgggt
ttcacccacttccgcctctgtatcatgaaccccgggcagcccgattacttgaccaacgaa
cccatggacgaggctttcggtgcggtcgtcaaaacctgcccgaacctccaacgcctggca
gtttctgggcggttgaccgaccttacgtttgaatacattgggaaatacgcaaaaaacttg
gaaactctttcggttgcttttgcgggtagtagtgatttagggttgaagtatgttttgggc
ggctgcccgaaactgaggaagcttgagatccgtgactgcccgtttggaaacgcggcgttg
ctttcgggtttgaccaaatatgaatcaatgaggtctctttggatgtcggcttgtaatttg
actatgaatgggtgtagggttttggctaaagagatgccgaggttaaatgttgaagttatg
aaagatgaagatagtgaggatagtcaggctcataaggtttatgtttatcgaaccgtggcg
ggacctcgaagggatgccccacctttcgtcctcaccctctga
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