Lactuca sativa (garden lettuce): 111882882
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Entry
111882882 CDS
T05352
Name
(RefSeq) uncharacterized protein LOC111882882
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03013
Nucleocytoplasmic transport
lsv03015
mRNA surveillance pathway
lsv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111882882
09122 Translation
03013 Nucleocytoplasmic transport
111882882
03015 mRNA surveillance pathway
111882882
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111882882
03041 Spliceosome [BR:
lsv03041
]
111882882
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
111882882
Spliceosome [BR:
lsv03041
]
Complex C
Other components
EJC/TREX
111882882
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
111882882
NCBI-ProteinID:
XP_023735024
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Position
4:complement(296710214..296713053)
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AA seq
590 aa
AA seq
DB search
MSSKKPSSRYVVFENRSLDQWKVTELKEELKKRKLITRGLKDDLVKRLDEAIRAELEEDN
KNHENGVNDDEQPEIPSDDAVADPIVADKTMDDNIAKNESIKEDNVTEKVDKNESLDQDH
ITEKLDKDESLDKHKVTENLDDENRDKDKVTENLEIDIVQKVSVETSVIVTEVMVSQELG
QQELQNEEVSNLQESNSKPLPKEEEAEPNSSEIGSQVVEVSQVKSDSISIVSITEKNELK
DNVITDDVKLELDVKPSILDDGVKTDPVVVDEKDFKIAETESKKNDILDVGSPEKLNLDD
DSMEEDALESKQSDSNFISQDITEKTQIPPLDVMVEDTNTEIADVSTKRKQYDQEAVANN
EVVKRQRRWNSNNAPEQITTPKGGSMKHSFSRSDSSVSHEEPKERVVPPSSKPATTSLRV
DRFLRPFTLKAVQELLGKTGTVVSFWMDHIKTHCYVTYSSVEEAVETRNAVYNLQWPANG
GRLLMAEFVDPSEVKTRTDPPPSPTPVTTTTTPLPLPPPPPLSLPPQSREPPQHHLPPAP
PLLEKLEPPIMTLDDLFRKTRATPRIYYLPLSDEQVAGKLKTQGKAVVKQ
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcaaaaaaccatcatcgcgctatgttgtctttgaaaatcgttccctcgatcaa
tggaaagtaaccgagctgaaagaagaactcaagaaacgtaaactaattaccagaggattg
aaagatgatctggtaaagagattggatgaagctattcgtgctgaacttgaagaggataac
aaaaaccatgaaaatggtgtcaatgatgatgaacagcctgaaattccatctgatgacgca
gtagcagacccaatcgttgcagacaaaaccatggatgacaacattgccaaaaacgagagc
ataaaggaagacaatgttacagagaaggttgataaaaatgagagcttagaccaagatcac
atcactgagaagttggataaagatgagagcttagataaacataaggttacagagaatttg
gacgatgaaaacagagataaagataaggttacagagaatttagaaatagatatagttcaa
aaggtttctgttgaaacatctgttatagtaactgaggttatggtatctcaagaattgggt
cagcaggagttacaaaatgaagaggtgtcaaacttgcaggaatcaaactcaaagccattg
ccaaaggaagaagaagccgagccaaattcatctgaaattggaagccaggtagtcgaggtc
agccaagtaaaatctgattctatttctattgtgtcaattactgaaaagaatgaactaaag
gataatgtaattactgatgatgtcaaactagaacttgatgttaagccatcaatccttgat
gatggtgtcaaaacagatccagttgtggttgatgagaaagatttcaagattgctgaaact
gaaagtaagaaaaatgatattttagatgtgggttctccagagaagttaaatttagatgat
gattccatggaagaagatgctttagaaagtaagcaaagtgattccaacttcatttctcaa
gatataactgaaaaaacacaaatacctcctcttgatgttatggttgaagatacaaatact
gaaattgctgacgtgtccacaaaaagaaaacaatatgaccaagaagcagtagcaaacaat
gaggtagtaaagaggcagcgcaggtggaattccaataatgcccctgaacagattactaca
cctaagggtggttcaatgaagcacagcttttcaagatctgattcttcagttagtcatgaa
gagccaaaagaacgtgttgttcctccatcatcaaagcctgcaactacttctctcagagtg
gaccgttttctgcgtccgtttactttaaaggctgttcaagaacttcttggtaaaactggg
acagttgtcagcttctggatggatcatattaaaactcattgttatgttacttattcatct
gttgaagaagctgtagagactcgaaatgcagtatacaacctccaatggccagcaaacgga
gggcggcttctcatggcagaatttgtcgatccatccgaagtcaaaacccgaaccgaccct
cctccatcaccaactccggtcaccaccaccacaaccccgcttccgcttccacctccaccg
ccactctcccttccaccacaatcaagagaaccaccacagcatcatctacctccagcacca
ccactcctggaaaagctcgaacctccgatcatgacattggatgatttgttcagaaagact
cgagcaactccccggatttactacttgccattatccgatgagcaggtcgccggaaaactg
aaaactcaggggaaggctgttgttaagcagtag
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