Lactuca sativa (garden lettuce): 111883041
Help
Entry
111883041 CDS
T05352
Name
(RefSeq) protein RST1 isoform X1
KO
K27498
focadhesin
Organism
lsv
Lactuca sativa (garden lettuce)
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111883041
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111883041
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3730
RPA_interact_N
Motif
Other DBs
NCBI-GeneID:
111883041
NCBI-ProteinID:
XP_023735166
LinkDB
All DBs
Position
4:complement(405194890..405206510)
Genome browser
AA seq
1828 aa
AA seq
DB search
MDSFYPLLERTRLPQPSLQKLAVISIFEKLRSPSTLTGPESDPGIHAVTQCLNSNSPAVV
DQSVRELCLLVKDSKLKLSRGLMELQSALDGSDSRFVNVFVKAIGFLVQLGFRNDHLCFR
FQSSEAHPFVKIISCRIEVQSELVRQVLMFISQNRHLGMEGVCEFLKPFLNLLVIQMSSS
ATMSSLARNLLSSIASLCCSFPQDAIPVFKLLMGCCKYVQCNNTEDVTNVSYLMEAIVDA
FVGVLSHLAANGVLIHDAQLCGAELLEMVFSLYTDILKYSGGEEGIFDMSRRLIGVQAEL
GLKFIPEASSVMLSLFVNLIHSEIEHIQLSILKLVLDLIKWKSGNDTINDTHEEILFVFP
AINLMSSPSRYIKEAASELLIILKELSVNFLVAPINEVLMEEDKFPRISRLEDIIFRVFR
HLWFQDQTSSSGSFYLNLVLDSEKFVEEKQNLFKSWSWTASITEYCQNMVEIQKSSLPKS
QSQEILPREIPALLGAIASVVIVHPTLGNSAVDLLAVTGNMDPKLGVPLFLVILFYQNIF
SGKSEEMDLHDILLKILRMLPSLVSHPAMIPLVVQSILPMLQKDANPVLYATALRLLCKT
WEINDRIFGSLQGLLLPEAFTQFKHERSICISMAVTVRDVCKKNPDRGVDIILSVEACIE
STDAMIQALGIQSLALLCEADVIDFYTAWGVIKKYVVSYLNDPVVANSICLLLRWGAMDA
EAYPENATSVLQILWEIATSRNPSHGSLWANARESAFEALTQYEVHHLQQFIPDFREKNI
QVLVSEIDPKVLGAMERFEAKIITHQHITRRRVVKEKRLPANKIEKLLDVFPRVIGISGT
NNKARELPGAALFHLSFGTKDENTQRGSKVMHDLHSRYENALMEIAASLQLSRNIIVALV
SLQSWKPFLQHWMRACVMLLDVKKPSNVLDTASKAADDILKCMRQMAEKSIPRSAENIGL
AMGALCLILPPSAHATKASASKFLLSWLFQHEHEYRQWSAAISLGVISSCLHVTDHKQKF
QNINALVEAASTSKSTLVRGACGAALGYSCQDLLTRIQVESDSHLDKELQESDLLGKIVR
TLCGLINQYAQSSSRDLQTLSEYFPSNTIDPDIAQTFSEKTSDYLEEDIWGVSGLVIGLG
GSIPAIYRSGRIDVVKKIKDLIISWIPLHNMSMSENLELVLSMGACLALPFVVSFSQKVE
LIEGAEIEYFASGYRDLINELLSTKNSEAFRQSLLMAACVGAGNFVGCVLNEGIHSLDAK
CVKDLLDMFKKIYSNRQPPLMHLGAMLGVVNALGAGAGTLFLNCPLPFSPSVSEHKESCY
MSGPLLSNTVMELHLTSLIQDIFLVGQNSDDQQLQQYAAWSVSFVRHYIWSSDLHNAKPN
SASASASQSFPDDSIVLKLSLWLMNLNYSQTTTSLPLNTIATVLRCLTHAPRLPQLDWGP
LIRRCMRYESDSVDYKEKLREECLVFSLFHGSNFNALLTFLDELCDFSRFKMLEMNLQMC
ILSHLPHTLKIFSGSRLEKLLNDLTNFIQSPFSSDQSYNSNNNPEQKSLLRKSFWKGIRV
CFEEASLDSEKLMVEFEDCMEVLFSLLPQSSVLTYEWEEWSEAVKCLGKARGEWLSHCLE
IPAEMSLSLSLSQKENIGFLEAKKKMIAKARLVKIGCIPLIELSKLKPYIFNTRSDGIWD
VLMEVVMALQHAEGSVKRQWLVDAAEISCVTDYPITGMQFMGLLCGSVSKYMPLLIVNPH
TVLSDLPLTLTSLLLHDDDDGGNWGVVAEPLVLLMWTLTNRIYDSWVTNANANTNDVFLL
KLTHHTCVALKHHLPPDKQLLLANMTVP
NT seq
5487 nt
NT seq
+upstream
nt +downstream
nt
atggactccttttatcctctccttgagagaactcggctacctcaaccctcactccaaaaa
ctcgcggttatctccatattcgagaagctccgatcacccagtacactcactggacccgag
tccgaccctggaatacacgccgttactcaatgcctgaactcaaattctccggctgttgtt
gatcaatcagtccgagagctatgtcttcttgtaaaggactccaaattgaaactttctcgg
gggttaatggaactccagtcagcactcgacggctctgattcgcgctttgttaacgtgttt
gtcaaagctataggttttctcgtacagttagggttcagaaatgatcatctttgctttcga
ttccagtcttcggaagctcatcctttcgttaagattatttcttgccgaatagaggttcaa
tctgagctagtgcgacaggtgcttatgtttattagtcagaataggcatctgggaatggag
ggagtttgtgaattcttaaaaccattcttaaaccttctggtcatacaaatgtcatcttca
gcaacaatgtcttcattagcaaggaaccttttatcctccattgcatcactatgctgttca
tttcctcaagatgcaattcctgttttcaagctgttgatgggatgctgtaaatatgtgcag
tgcaacaacacagaagatgtcaccaatgtttcttatctcatggaggctattgtggatgct
tttgttggtgttttgagccacttggctgctaatggtgtgctgattcatgatgcacaatta
tgcggagcagaacttttagagatggtgttttcactgtatacagatattctcaaatattct
ggtggagaagaaggcatctttgacatgtcaaggaggttaataggtgtgcaggcagagctt
ggtttgaaattcatacctgaagcatcatctgtgatgttatcattgtttgttaacctcatt
cactcagagattgaacacatacagctatcaatattaaaactggttctggatcttataaag
tggaaaagcggaaatgataccattaatgatacgcatgaagagattttatttgtttttcct
gccatcaacctcatgtcatctccttccagatatattaaagaagcagcatctgagttgctt
attatcttaaaagagctctctgtgaacttcctggttgctcccataaatgaagtgcttatg
gaagaagataaatttccacgtatcagcagattggaagacatcatatttagggtattccgt
catttgtggtttcaggatcaaacctcttcttctggttccttttatctaaatttggtatta
gatagcgaaaaatttgttgaagaaaagcagaatctgtttaaaagttggagttggacagct
tcaataactgagtattgtcaaaatatggttgaaatacaaaaatcatcccttcctaagtct
cagtctcaggagatacttccacgtgaaattccagctttacttggtgcaattgccagtgtt
gttattgtgcatcctacactcgggaactctgcagtagatctgctggcagttactggcaat
atggatccgaaacttggtgttccgttatttctagtaattttattttaccaaaatatattt
tctggtaaatctgaagaaatggacctccatgacattttgctaaaaattttaagaatgctc
ccttcgcttgtgtcacatcctgctatgataccacttgtagtccagtcaatcttaccaatg
cttcagaaggatgcaaatccagtgctatacgctactgctttgcgtctactttgtaagact
tgggagatcaatgatcgtatttttggaagtttacagggtttattacttccagaagcattc
acacagttcaaacacgagagaagtatttgtataagcatggctgttactgttcgggatgtt
tgcaaaaagaatcctgacaggggtgtagacattatcttgtctgttgaggcatgcattgag
agcacagatgctatgattcaagctcttggtatccagagccttgcccttctttgtgaagct
gatgtgattgatttttatactgcttggggtgttataaaaaagtatgtcgtgagctacttg
aatgacccggttgttgcaaatagcatatgcctgcttttaagatggggtgcaatggatgca
gaagcatatccagaaaatgcaacaagtgttttgcagattttatgggaaatagccacatca
agaaatccttctcatgggtctctatgggccaatgccagagaatctgcttttgaggcatta
actcagtatgaggtacatcatctccaacaattcattccagatttcagggaaaagaacata
caagtgcttgtttctgagattgaccccaaagttcttggagccatggagagatttgaagcg
aagatcataacacaccaacacatcacaaggcgaagagtagtgaaggagaaaagattacct
gccaacaagattgagaaattactagatgtctttcctcgggttattggcatttcaggaact
aataataaagcacgagaactgccaggtgcagccctctttcatctttccttcggcacaaaa
gacgaaaatacccaaagagggtcaaaggttatgcacgatttacattccagatatgagaat
gcattaatggagatagctgcatcactacagctctcaaggaatattattgttgcacttgtt
tcacttcaatcctggaaacccttcttgcaacattggatgcgggcttgtgtaatgttactg
gatgttaagaagccctccaatgtgttggatacagcttcaaaagcagctgatgatattctg
aagtgtatgagacaaatggctgagaaatctatccctaggtctgctgagaatattgggcta
gctatgggtgcactttgtttgatccttcccccttctgctcatgctacaaaagcaagtgcc
tcaaaatttctgctgagttggttatttcaacatgaacatgaatatcgccaatggtcagct
gctatttctcttggagtcatttcaagttgcttgcatgtcactgatcacaaacaaaaattc
caaaacatcaatgcacttgttgaggctgcaagtacgagcaaaagcactcttgtaagaggg
gcttgtggggctgctttaggttattcatgtcaagatcttcttacacgtattcaagtagaa
tccgactcccatttggataaggagttgcaagaatccgatttacttggaaaaatagttaga
actttatgtggattgataaatcaatatgctcaatcttcaagtagagatctccaaacccta
tctgaatacttcccatcaaataccatagatccagatattgctcaaaccttttctgaaaaa
acttctgattacttagaggaagatatatggggtgtttcaggacttgtgattggtttagga
ggttctattcctgcaatatacagatccgggcgtattgatgtggttaaaaagataaaagat
ttaattatatcatggattcctcttcacaacatgagtatgagtgagaatttggaactagtt
ttatccatgggggcttgtcttgcacttccatttgtagtatctttttcacagaaagtagaa
ctgattgagggtgctgaaattgaatattttgcgagtgggtatagagatcttatcaatgaa
ctgctttctacaaaaaattccgaggcttttcgccagagtttgttgatggcagcgtgtgtt
ggagcaggaaattttgttggctgtgttttgaatgaagggattcattcgttggatgctaaa
tgtgttaaggatttactagatatgtttaaaaaaatctactctaatcgccaacctcctctt
atgcatttgggtgcaatgcttggggttgtgaatgcgttaggagcaggggctgggacactt
ttcctaaactgccccttaccgttttcgccatctgtttctgaacacaaggaatcttgttat
atgagtggtcctctgttgtcaaacactgttatggagctccatttgacatcattaatacaa
gatatatttcttgttggtcaaaattccgatgaccaacaactgcagcagtatgcagcttgg
tcagtttcatttgttagacattacatatggtccagtgatcttcacaatgcaaaacctaat
tctgcttctgcatccgcatcccaaagcttcccagatgatagcatagtcttgaaactcagc
ctgtggctgatgaatctaaactactctcagaccaccacaagtctacctcttaacacaatt
gcaactgttttgcgatgtctcacacacgcaccaagactaccacagctcgattggggccca
ctcatcagaagatgcatgagatacgaatcagattctgttgactataaagaaaaactaagg
gaagaatgtttagtattctctttgtttcatggaagcaacttcaatgctttactcaccttc
cttgatgaactgtgtgacttttcaaggttcaaaatgcttgaaatgaaccttcagatgtgt
atcctttctcacctcccacatacactaaaaatattctcaggatctcggcttgaaaagcta
ctcaatgatctcaccaacttcatacaatcaccattttcctctgatcaaagttataatagt
aataataatccagaacagaaaagcctgttgagaaaatccttctggaagggaattcgtgtg
tgttttgaagaagcttctcttgattctgaaaaactcatggttgagtttgaggattgcatg
gaggtcttgttttctttgttgccacaaagctcggtgttgacttatgaatgggaggagtgg
tctgaggcagtaaaatgtttggggaaggctcgtggggagtggttgtcacattgtttggag
attcctgcagagatgagtttgagtttgagtttgagtcaaaaagaaaacattggatttctt
gaagcaaagaaaaagatgatagctaaagcaaggctagtgaagattggttgtattccattg
attgaactttcaaaactcaaaccttatatattcaacaccagatctgatgggatatgggat
gttctaatggaagttgtaatggctttgcaacatgctgaaggaagtgtgaaacgacagtgg
cttgttgatgcagcagaaattagctgtgtcacagattaccctataactggtatgcagttt
atgggtttgctgtgtggtagtgtgtccaagtatatgcctcttcttatagtgaaccctcac
actgtattgagtgacctacccttaaccctcacttctctactcttacatgatgacgatgat
ggtggtaactggggggtagtggctgaacccctggttttgctgatgtggactttgaccaac
cgtatttatgattcttgggttacaaatgcaaatgctaatactaatgatgtgtttctgttg
aaactgacgcatcatacttgtgttgctttgaaacaccatctgcctccggataaacagctt
ttgcttgctaacatgactgttccctaa
DBGET
integrated database retrieval system
