Lactuca sativa (garden lettuce): 111883088
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Entry
111883088 CDS
T05352
Name
(RefSeq) zinc finger CCCH domain-containing protein 41 isoform X1
KO
K13192
RNA-binding protein 26
Organism
lsv
Lactuca sativa (garden lettuce)
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lsv01009
]
111883088
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111883088
03041 Spliceosome [BR:
lsv03041
]
111883088
Protein phosphatases and associated proteins [BR:
lsv01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
111883088
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
111883088
Spliceosome [BR:
lsv03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
111883088
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
zf_CCCH_4
RRM_Nup35
RRM_3
JIP_LZII
zf-CCCH
Motif
Other DBs
NCBI-GeneID:
111883088
NCBI-ProteinID:
XP_023735224
LinkDB
All DBs
Position
4:405189023..405194332
Genome browser
AA seq
736 aa
AA seq
DB search
MELRVSAQDKEISDDDDDRNHKHRRRDDTRLHSLDDDDDDDDDDVFTKPYKRGSKHSQNG
SHSNETWKKYSYNPLEKDKGFSHFSRGPSDLNQKLRVNQQFCVDHGSVWSQSQPFSVDPH
GLFAGRGSNSWGPFGLDMNMNMIHHPVGLQATFRPPSLNMGLTRQRCRDFEEQGFCLRGD
MCPMEHGMNRIVVEDVQSLSQFNLSVSLPSANLSIAPAGIGPSPPTITTTNSKSSHGKNI
KHVVDFSGAAAAADFYDPDQPLWGNASHMPAGPQPNDSLLLDASPSDNPDHELFVSTGTR
SYAQGTSRIKTEENMQKNESGNGRKPSQKAQRTLFLSGIPHQSNKRETLISHFKRFGEVI
DIYVPLNSERAFVQFSKREEAEAALMSPDAVMGNRFIKLWWANRDNIPFKRKDDSLHNDV
NAPVPVSVSDSDHPPKPVAVVANGTKEPSPPLQKKLENLEVLKEELRKKQEMLDQKRNDF
RRKLDKLAKQTTFLKGEVAPEQAAKKQKSGGLAESTKAASSDRDTILPSPPDDVAANTNS
SKSVGPTQPQNYKTTPLGLSALKESPKLNLKLQSSVAVTVRNHRFKLDNRPTAFKIIPPL
PDGLAHVSVLKEHFSAYGDFSKVQLDLDDDIIKTCATIYFTSRHAAEKAFLNGKKWKAHN
LHFTWLINSNSNSTTCKHHNSDSSSNQPTSVVLEIPKTDYPQKPLLSSSSGDGELDKREI
VKEPEQQQQEESNQSV
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atggagcttagggtttcagctcaagataaagaaatcagtgatgatgatgatgatcgaaac
cataagcatcgtagaagagatgatacaaggttacattcattagatgatgatgatgatgat
gatgatgatgatgtatttacaaagccatacaaaagaggaagtaaacattctcaaaatggt
tctcactccaatgaaacatggaaaaagtacagttataaccctttggagaaagataaaggc
ttttctcatttttcgcgaggaccttcagatttgaaccagaaacttagggtaaaccaacaa
ttttgtgttgaccatggtagtgtttggagtcaaagtcaaccattttctgtagaccctcat
ggtctttttgcagggaggggttcaaattcatggggtccatttggattggatatgaatatg
aatatgatccatcatcctgttggattacaagcaacattcagaccaccttctttaaacatg
ggacttacaagacaacgatgtagggactttgaggaacaaggtttttgtctacgaggtgac
atgtgtccaatggaacatggcatgaatcgtattgttgtagaagatgttcagagcctctca
cagttcaatctctctgtatcacttcctagtgcaaatctatctatagcgccagctggcata
ggaccttcacctccaactatcaccacaacaaacagcaaaagttcacatggtaaaaatatc
aaacatgttgttgacttttctggtgctgctgctgctgctgacttttatgatcctgatcag
cctctatggggtaatgcttctcatatgccagctggacctcaaccaaatgattctttgttg
ttggatgctagtccatctgataaccctgatcatgaactctttgtaagcacgggtacaaga
tcttatgcacagggtacaagtagaatcaaaacggaagagaatatgcaaaaaaacgagagt
ggaaatgggcgtaagccttcacaaaaggcacaacggacattatttttgagtggcattcca
catcaaagtaacaaaagggaaaccctaatttcccattttaaaagatttggggaagttatt
gatatttatgttccgttaaatagcgaacgagcttttgttcagttttccaaaagagaagaa
gcagaagctgctttaatgtctcctgatgctgtaatgggaaatcgctttattaagctatgg
tgggctaatcgtgacaacataccattcaaaagaaaagatgattccctgcataatgacgta
aatgcccctgtccctgtctctgtgtctgattctgatcatcctccaaagcctgtggctgtg
gttgctaatggcactaaagaaccttctccacctttgcaaaagaagctggagaatttagag
gttttgaaggaggaattaaggaaaaaacaagaaatgcttgatcagaaaaggaatgacttc
aggcgcaagcttgataaacttgcgaaacaaactacatttctaaaaggtgaagtggcacct
gaacaggctgctaaaaaacaaaaatcgggaggtttagctgagtctacaaaggctgcaagc
agtgatcgtgataccattctaccatcacctcctgatgacgtggcagctaatactaatagc
agcaaatctgtgggtcccactcagccacaaaattacaaaacaacccctcttggattatca
gcattgaaagaatctccaaagttgaacttgaaattacaatcatctgttgctgtgactgtg
agaaatcatcggtttaagctggacaatcgtccaaccgcatttaagatcattccacctctg
ccagatggccttgctcatgtttctgttttgaaggaacatttttcagcatacggtgatttt
tcaaaggtgcagttagatttagatgatgacataatcaaaacttgtgccacaatatatttc
acaagccgacatgcagccgaaaaggcgtttttaaatggtaaaaaatggaaagctcacaac
ctacacttcacatggctaataaattccaattccaattccaccacttgtaaacaccacaac
tcagattcttcttctaaccaaccaacatctgtggtgcttgaaattccaaaaactgattat
ccccaaaaacctttgttgtcatcatcatctggagatggagaattggataaaagggaaatt
gtcaaggaaccagaacaacaacaacaagaagaaagtaatcaatcagtctaa
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