Lactuca sativa (garden lettuce): 111883098
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Entry
111883098 CDS
T05352
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1 isoform X1
KO
K14962
COMPASS component SWD2
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111883098
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111883098
03036 Chromosome and associated proteins [BR:
lsv03036
]
111883098
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
111883098
Chromosome and associated proteins [BR:
lsv03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
111883098
COMPASS/SET1 complex (yeast)
111883098
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_EML_2
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
EIF3I
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_TEP1_2nd
Beta-prop_Nup120_160
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_WDR75_1st
Beta-prop_SPT8
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_SCAP
PQQ
Beta-prop_DCAF12
WD40_RFWD3
Beta-prop_VPS8
WD_LRWD1
MIOS_WD40
DUF2963
Motif
Other DBs
NCBI-GeneID:
111883098
NCBI-ProteinID:
XP_023735238
LinkDB
All DBs
Position
4:405258583..405263140
Genome browser
AA seq
321 aa
AA seq
DB search
MRTTSVSELNDGIIRSMSIGALFSDFVGKINALDFHRTADLLVTTGEDDSVRLYDIANGK
LLKTTHHKKHGADRICFTHHPSSVICSSTRNLDSGAESLRYLSMYDNRCLRYFKGHKERV
VSLCTSPVDDSFMSGSLDHTVRIWDLRVNACQGILRLRGRPTVAYDQQGLVFAVSMEGGA
IKLFDSRSYDKGPFDTFLVGGDMAEIWDIKFSNDGKSMLLTTKSNNIYVLDAYNGEKRCG
FSVDASPNTTIESTFTPDGQYVISGSGDGTLNAWSIPTRSKVANWDSQIGVASCLKWAPR
RVMFAAASVGVLTFWIPNDTI
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atgaggaccacatcggtgtcggagctcaacgatggaatcatccgcagtatgtctattggg
gcactgttttcagatttcgttggaaagataaatgcacttgattttcatcgcactgcggat
cttttggtaacaacaggtgaagatgattctgttcggctatatgacatagcaaatggcaag
ttactaaaaaccacacatcataagaaacatggtgctgatcgtatatgttttacacaccac
cctagttctgtcatatgctcttcaacacgaaatttggattcaggtgcagagtccctgcgt
tatctatccatgtatgacaatcgttgccttcgttacttcaagggccataaagaaagggtt
gtatccctgtgtacatctccagttgatgacagtttcatgtcaggttctcttgatcacact
gtcagaatatgggatcttcgtgtgaatgcctgccagggaattttacgcctaagaggtagg
cctacagttgcatatgatcaacaaggccttgtttttgcagtatcaatggaaggaggtgct
atcaaattatttgactcacgatcatatgataagggcccatttgacacgttcttggtggga
ggtgacatggctgagatctgggatataaaattcagtaatgatggaaaatcaatgcttttg
actaccaaaagtaacaacatatatgttctagatgcgtataatggagagaagagatgtgga
tttagtgtggatgcttctccaaacacaacgattgagtccacatttacacctgatggccaa
tatgtgatttcaggctctggagatggaacattgaatgcttggagcattcccaccaggagt
aaggtggcgaattgggacagccagataggtgttgcatcgtgcttgaaatgggcacctcgt
agggtcatgtttgctgctgcttctgtgggggttctcactttctggataccaaacgataca
atttag
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integrated database retrieval system
