Lactuca sativa (garden lettuce): 111883177
Help
Entry
111883177 CDS
T05352
Name
(RefSeq) probable polygalacturonase At3g15720
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv00040
Pentose and glucuronate interconversions
lsv01100
Metabolic pathways
Module
lsv_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
111883177
Enzymes [BR:
lsv01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
111883177
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
111883177
NCBI-ProteinID:
XP_052620829
LinkDB
All DBs
Position
6:29859704..29865051
Genome browser
AA seq
456 aa
AA seq
DB search
MVSHIKSNSYLETQKLIFPYTKILLMINILFIGNEWRGHGKCNQNTRLELPASTDFKEMG
FLMVVLLSMSCLSFGSKITSVATYDVTSYGAKGDGNTDDSSAFLRAWDDLCGDMSPEPTL
IIPSDKTFLINPVAFNGPCKSPTVNIKLLGNITAPKTLDGWKGCINNNFWIYFTSVQGLK
IQGPGQIDGQGSIWWKNEGQTKTNACNRPTALHFNSCNGLQLSGTKHINSPKIHRSINGC
EGVDVGNIQIFAPRVSPNTDGIDINYSSHVTIHDSNIQIGDDCVAINGGTYDINVTRVFC
GPGHGISIGSLGENGGHDTVEQVRVENCNISGTTNGLRIKTVPYGTGYARGIVFQDIHLV
NVVNPIIIDQHYCTNSENTDCPAPPDASAVKVSDVTYTNIYGSSATKQVITFNCSGKYNY
TEIVTNEVGITGLDETSYCQNTQGKFIDTNPPINCY
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atggtatctcatataaaatctaatagttatttggagacgcaaaaacttatatttccttac
acaaagatactcctgatgataaatatattatttataggaaatgaatggagggggcatggc
aagtgtaatcaaaacacaagattagagttacctgcttcaactgatttcaaagaaatgggt
ttcttgatggtagtcttgttgagcatgtcttgtttatcatttggctcgaaaatcacaagt
gttgccacctacgatgtaacatcttatggtgcaaaaggagatggaaatacagatgactcc
agtgctttccttcgagcatgggacgatttatgtggagatatgtcgccagaaccgacattg
ataattccatcagacaagacatttttgataaacccggtggcattcaatggtccatgcaaa
tccccaactgtaaatattaagctgttgggtaacatcactgcaccgaagactctcgatgga
tggaaaggttgcattaacaataacttttggatatacttcacatccgtgcaaggactcaag
atccaaggacctggtcagattgatggccagggatccatttggtggaaaaatgaggggcaa
actaaaaccaatgcatgcaatcgcccaactgctttacactttaattcttgtaacggcctt
cagttgagtggtacaaaacatatcaacagcccgaagatacataggagtatcaatggttgt
gaaggtgtagatgttggaaatattcaaatttttgctcctcgagtcagccccaatactgat
gggatagacatcaattattcttcccatgttactatacatgattctaacattcaaattggt
gatgattgtgtcgctataaatggtggcacgtatgatattaatgtaacaagagtgttctgt
ggacctggtcatggcataagtatcggaagtcttggggaaaacggtggtcacgacacagtt
gaacaagttcgtgtagaaaattgtaacatctcaggaacaacaaatgggttgcgaatcaaa
acggtgccgtatggaacggggtatgctagggggattgtatttcaggacattcatctggta
aacgttgtaaatccaattataattgatcaacattactgcactaattctgaaaatacggat
tgccccgcaccgccagatgcatcagctgtaaaagtgagcgatgttacgtatacgaatata
tatgggtcatcggcaacaaagcaagttattactttcaattgcagtggaaagtacaactat
actgaaattgtaacaaacgaagttggaataacgggacttgatgaaacttcttactgccaa
aacactcaaggaaaatttattgataccaaccctcctattaattgttattag
DBGET
integrated database retrieval system
