Lactuca sativa (garden lettuce): 111883178
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Entry
111883178 CDS
T05352
Name
(RefSeq) probable polygalacturonase At3g15720
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv00040
Pentose and glucuronate interconversions
lsv01100
Metabolic pathways
Module
lsv_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
111883178
Enzymes [BR:
lsv01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
111883178
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GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
111883178
NCBI-ProteinID:
XP_023735300
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Position
6:29845640..29848768
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AA seq
431 aa
AA seq
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MINRKVFIGNEWRGHGKCNQNTRLELPASTDFKEMGFLMAVLLSLSCLSFGSKITSVATY
DVTSYGAKGDGNTDDSSAFLRAWDDLCGDMSPEPTLIIPSDKTFLINPVAFSGPCKSPTV
NIKLLGNITAPKTLDGWKGCINNNFWIHFTSVQGLKIQGPGQIDGQGSIWWKKGQTKTNA
CNRPTALHFNSCNGLQLSGTRHINSPMLHISINGCEGVDVGNIQIFAPGDSPNTDGIDIS
YSSHVNIHDSNIQTGDDCVAINGGTYDINVTRVFCGPGHGISIGSLGENGGHDTVEQVRV
ENCNISGTTNGLRIKTVPYGTGYARGIVFQDIHLVNVENPIIIDQHYCTNSENSDCPAPP
DASAVKVSDVTYTNIYGSSATKQAITFNCSGKYNCTEIVTNEVGITGLNEISYCQNTQGK
FIDTTPPINCY
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgattaacagaaaagtatttataggaaatgaatggagggggcatggcaagtgtaatcaa
aacacaagattagagttacctgcttcaactgatttcaaagaaatgggtttcttgatggca
gtcttgttgagcttgtcttgtttatcatttggctcgaaaatcacaagtgttgccacctac
gatgtaacatcttatggtgcaaaaggagatggaaatacagatgactccagtgctttcctt
cgagcatgggacgatttatgtggagatatgtcgccagaaccgacattgataattccatca
gacaagacatttttgataaacccggtggcattcagtggtccatgcaaatccccaactgta
aatattaagctattgggtaacatcactgcaccgaagactctcgatggatggaaaggttgc
attaacaataacttttggatacacttcacatccgtgcaaggactcaagatccaaggacct
ggtcagattgatggccagggatccatttggtggaaaaagggacaaactaaaaccaatgca
tgcaatcgcccaactgctttacactttaattcttgtaacggccttcagttgagtggtaca
agacatatcaacagcccaatgctacatattagtatcaatggttgtgaaggtgtagatgtt
ggaaatattcaaatttttgctcctggagacagccccaatactgatgggatagacatcagt
tattcttcccatgttaatatccatgattctaacattcaaactggtgatgattgtgtcgct
ataaatggtggcacgtatgatattaatgtaacaagagtgttctgtggacctggtcatggg
ataagtatcggaagccttggggaaaacggtggtcatgacacagttgaacaagttcgtgta
gaaaattgtaacatctcaggaacaacaaatgggttacgaatcaaaacggtgccgtatgga
acggggtatgctagggggattgtatttcaggacattcatctggtaaatgttgaaaatcca
attataattgatcaacattactgcacaaattctgaaaattcggattgccccgcaccgcca
gatgcatcggctgtaaaagtgagcgatgttacgtatacgaatatatatgggtcatcggca
acaaagcaagctattactttcaattgcagtggaaagtacaattgtactgaaattgtaaca
aacgaagttggcataacaggacttaatgaaatttcttactgccaaaacactcaaggaaaa
tttattgataccacccctcctattaattgttattag
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