Lactuca sativa (garden lettuce): 111883553
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Entry
111883553 CDS
T05352
Name
(RefSeq) nuclear pore complex protein NUP107
KO
K14301
nuclear pore complex protein Nup107
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111883553
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111883553
03036 Chromosome and associated proteins [BR:
lsv03036
]
111883553
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
111883553
Chromosome and associated proteins [BR:
lsv03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
111883553
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup84_Nup100
DUF1570
Motif
Other DBs
NCBI-GeneID:
111883553
NCBI-ProteinID:
XP_023735641
LinkDB
All DBs
Position
4:complement(160327265..160333071)
Genome browser
AA seq
1062 aa
AA seq
DB search
MNVDMDTSPSYFDPQDLSLRERFRRYGKRNSPSPHQENYQSKFSNAALYLENIKKEVDHS
DGDQSEGINARTQSSFKRRSPSVDSRGIAEMAIANDSVGRSRTHSLKACKLEEDASPDSG
DATFPLFASLFDAALQGLMSIPDLILRLEGACRNVSESINNSCTERHRIVEDKLMRQKAR
VLLDEAASWSLLWYLYGKGNEELPENLILLPTTSHLEACQFVAADHKAQLCLRLIQWLEG
LASKALDLENKVRGSHVGTHLPTSGVWNHTQRFLKKGSSNDKIVHHLDFDAPTRQHAQPL
SDDKKQDESLLEDVWALLRAGRLEEACHLCRSAGQSWRAATLCPFGGLDHSPSIEALIKN
GKNRSLQAMELESGVNNQRRLWKWASYCASEKIAEQESGKFETAVYAANCSNVKRVLPIC
NDWEAACWALTKSWLDVQVDLELSGETERSEDITSESLLGPENWPLQVLNQQPRDLSALL
QKLHSSESVHEAVIRGCKEQHRQIEMSLMLGDIPRLLDLIWSWISPSGGDEDIFRPHGDP
QMIRFGAHLVLVLRHLLADEMKDAFKEKTMTLGDLILHMYAMFLFSKQHEELVGIYASQL
ARHRCIDLFVHMMELRLNGSVHVRYKIFLSAIEYLPFSPGDDSNASFEKGSFEEIIERVL
SRSREVKVGKYDMSSDVAEQFRLHSLEKAMVIQWLCFTPPSTINNAIAVGIKLLIRALIH
SNVLFREFSLISMWRVPSMPIGAHKLLSILAEPLKHSSEALFSTEDNDVSDSMREFEDWN
EYYSCDATYRNWLQIELENAGIDPQDISNEEKHRANVVAMETLSSSMALLLRKENPWLVP
TEDEIYEFMEPTNLQLQATAMLCLPSGECMPPDASLCTALTSALYSSVSEQVVSHRHLLV
NVAISTKDRYSIEVSLQCTATESDGFGSNKVADGGLLAAIVAAGIKGELARFQAGVTMEI
MKIDAWYSGSDGSVGNPATYILRGLCRRCCIPEVILRCMQVSVSVMESGNDTHEIHDELI
ELVAAPETGLIHLFSQNQLQEFLLFEREYCLWKLELNEEAAA
NT seq
3189 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtcgacatggatacgtctccaagttattttgatcctcaagacttaagcctcaga
gagcgtttccggcgttacggaaaaaggaattcgccttcaccgcaccaagagaattatcaa
tcgaagttcagtaatgctgctctatatcttgaaaatatcaaaaaagaagttgaccattct
gatggtgatcaatcagaaggaataaacgcgagaactcaatcttcgttcaaaaggagatca
ccctcagtagatagtcgcggaatagctgaaatggctattgctaacgattcagttggtcga
tcaagaacgcattccttaaaagcttgcaagcttgaggaagatgcatcacctgatagtgga
gatgcaacatttcctttattcgcatctctttttgatgctgctcttcaagggttgatgtcc
atccctgatttgatattaagacttgaaggagcatgccgcaatgtttctgagtcaattaac
aacagctgtactgagagacacaggattgttgaggacaaattgatgaggcaaaaggctagg
gtgctacttgatgaggctgcttcttggtcacttttgtggtatttatatgggaaagggaat
gaagagcttcctgaaaatcttatcctgttgccaacaacttcacatctggaggcttgccag
tttgttgcagcagatcataaagctcaattatgccttagacttatccaatggcttgaagga
ttagcctccaaggctcttgatttggagaacaaggtacgtggctctcatgttggcacacat
ctccccacctctggagtctggaatcacacacaaagatttctaaagaaaggctcctcaaat
gacaagattgttcatcacttggattttgatgctccaacacgccaacatgctcaaccactt
tctgatgacaaaaaacaagatgaatctcttttggaagatgtctgggctctattaagagct
ggaagattggaagaggcatgccatctttgcaggtctgcaggacagtcatggagagctgca
accttatgtccatttggaggtttggatcattctccttccattgaagccctcataaaaaat
ggaaagaacagatctcttcaagctatggaattggaaagtggtgtgaataatcagagacgc
ctctggaaatgggcttcatattgtgcatcagagaaaatcgcagagcaagagagtgggaaa
tttgaaacagcagtatatgcagccaattgcagtaatgtgaaacgcgttttaccgatttgt
aacgattgggaggctgcatgctgggcgttgaccaagtcatggcttgatgttcaagttgat
ttggagttatctggtgaaactgaaagaagtgaagatattacttctgaatcacttcttgga
cctgaaaattggccacttcaagtattgaatcaacaaccacgtgacctttctgcccttctt
caaaagcttcattcaagtgagtctgtgcatgaagctgtaattcgagggtgtaaggagcaa
catcgccagattgaaatgagtttaatgttgggggatattcctcgtttacttgaccttata
tggtcatggatatccccatcaggaggcgatgaagatatcttcaggcctcatggggaccct
caaatgatccgttttggggcacatttagttcttgtgcttcggcatttacttgctgatgaa
atgaaggatgcttttaaggagaagacaatgactcttggtgatcttattcttcacatgtac
gcaatgtttcttttctcaaagcaacatgaagagttggttggaatctatgcatctcagctt
gcacgccatcgttgcattgacctttttgtccatatgatggagttacgcttgaatggcagt
gttcacgtgagatacaaaatctttctttctgctatagaatacctcccgttttcccctgga
gatgattcaaatgccagttttgaaaaaggaagctttgaagaaattattgaaagagtttta
tcaagatcacgagaagtaaaagttggaaaatatgacatgtcatctgacgtggcagagcaa
tttcggttacatagtcttgaaaaagccatggtcattcaatggctttgttttactccacct
tccaccattaacaatgctatagctgttggcattaagcttctcattagagcattaatccac
agcaatgtgctattccgggaattttctttaatttctatgtggagagttccatcaatgcct
attggtgctcataagttgcttagtatacttgctgagcctttaaaacattcatcagaagct
ttgttttcaacagaggacaatgatgtttctgatagtatgcgagagtttgaagactggaac
gagtactactcctgtgatgcaacatatcgcaactggctacaaattgaattagaaaatgcc
ggaattgaccctcaagacatttcaaacgaagagaaacacagagcaaatgttgtagctatg
gaaacattatcttcatccatggctttgctgctaagaaaagaaaacccatggttggttcct
actgaggatgaaatttatgaatttatggagcccacaaaccttcaactgcaagctacagct
atgctttgtttgccttctggtgaatgtatgcctccagatgcctcattgtgtacagctctc
acaagtgctctttattcttcagtatctgaacaagttgtatcacatcgccacttgctcgtg
aatgtagcgatttctacaaaagataggtactctattgaggtttcactgcagtgtacagca
acagagagtgatggatttgggtcgaataaagttgctgatggtggccttcttgctgctatt
gttgcagctggcattaaaggtgagctggcgagatttcaagcaggggtaacaatggaaata
atgaaaatagatgcatggtattctggtagtgatggatctgtaggaaatccagcaacatat
atcttgaggggtttatgtcgcaggtgttgtattccagaagttattcttcgatgcatgcag
gtttctgtttctgttatggagtctggtaatgatacgcatgaaatccatgatgaattgatt
gaattggttgcggctcctgaaactggcctcattcatttgtttagtcagaaccaattacag
gaatttttgttgtttgagagggaatactgcttatggaagttggagctaaatgaggaagca
gctgcttga
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