Lactuca sativa (garden lettuce): 111883739
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Entry
111883739 CDS
T05352
Name
(RefSeq) uncharacterized protein LOC111883739
KO
K15710
E3 ubiquitin-protein ligase SHPRH [EC:5.6.2.-
2.3.2.27
]
Organism
lsv
Lactuca sativa (garden lettuce)
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lsv04121
]
111883739
Enzymes [BR:
lsv01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
111883739
Ubiquitin system [BR:
lsv04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
111883739
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SHPRH_helical-1st
SHPRH_helical-2nd
Helicase_C
PHD
zf-C3HC4_2
zf-C3HC4_3
zf-C3HC4
zf-RING_2
TPR_12
PHD_5
zf-RING_UBOX
TPR_1
TPR_2
RNPP_C
Motif
Other DBs
NCBI-GeneID:
111883739
NCBI-ProteinID:
XP_023735835
LinkDB
All DBs
Position
2:complement(223883019..223890219)
Genome browser
AA seq
1619 aa
AA seq
DB search
MGRRKQTQPRRAQATVGNNGVSKEDFCNPDTSPALKTEHSGNNNPFYIEVDRDNWVSKEH
YDISEVILTNLNVSEECYDRKYEDQNFINEEKYNFRFRLNGVIKPLHIPVLSTSDIYLEF
IEKRVDMEAHVMVTGNFDGPSEGVSGLVHLVSMKFLTLRPTTGLTFSGNLSSIRLRVEIQ
KCTFEGSESFFGTTRQIWKKSMMNVMAWLRPEVTTSEARYGYKVPEDMEIGLQLNENTKG
SRFDVSGFYEAIKPSKDNPMLMDDLPDLLPELRPYQRRAAFWMVEREKGTFRHLRESQQS
QSVSPLCVPVDLVDSCFKIYYNSFNGSVSMNLENCSSYVVGGILADEMGLGKTIELLACI
FAHRKSDIDADDIRNKTIQVAGEQKSNIKRMKKERVECVCGAVSESSKYKGLWVQCDVCD
AWQHADCVGYQYKETNSEPIKDSESLNGDSRKRKSYKGSKVVICDGAHICPFCLELSQAT
GSPVPTGATLVVCPAPILPQWHAEITRHTSPGSLKVVVYEGVKPSSLYNNTTSVTKIDEL
INADIVLTTYDVLKQDLSHDSERNIGDRRLLRYQKKYPVIPTFLTRIFWWRICLDEAQMV
ESNAAAATEMAMRLPCMHRWCVTGTPIQRKLDDLFGLLRFLKATPYDVFKWWVDVIRNPY
EMGDAGAVEYTHNLFKQIMWRSSKSHVAEELHLPPQEECLTWLSLTPIEEHFYQRQHETC
LTYAREVIQSFKSSIPEEEASGNDSSDSFLTHVEAAKLLNSLLKLRQACCHPQVGSSGVR
SLQQSPMTMEEILMVLVGKTKVEGEEALRKLVVALNGLAGIAIIKQDFPQAISLYKEALE
LAEEHSEDFRVDPLLNIHIHYNLAEILPLTTNSIQKFNSGEQNPGSCEGNMCKTCDEDRP
FSLSSCTSYQSLQITCNNLKQKFLSVFNSRLSMAQLEFRKSYDLVSNGLKDRRHQHTAWW
AEALQYIEQNKDSSTDFIRKIGDAVSETLNTSRTSRLASRFQSITALKYHIQSGLEKLED
SRRTLLDRLLEVDQSMENPSIEDVERVRYCPKCQVNGEGLICVHCELDELFQAYEARLFR
FNKGHGGGVISSADEAVDLRKKVSALNRFYWTLSQPDKAPPPSSNEDEGKKRDVGEKVMV
SKSPSELEVVLGVIKSYSKAQLGKEAMSAARKHLSLLEGMRKEYGHARSLALAQAQVLNA
HDEISMATSRLRLRENEDDKSIDALSLEELETANVENSSEKFVALSSLLRVKGQLRYLKG
LVQSKQTVDDPSHEVMMNSNTNLVKEGLGDDMCPVCQDKITTQKMVFQCGHLTCCKCFIG
MSERGMSQADKKWMMCPTCRQPTEYGNVAFVDDEQKPPDVSVTAFKTSEASVTVNGSYST
KILAVTRRILCIGSTNPTDKILVFSSWNDVLDVLEHAFTANDISFIRMKGGRKSQVAISE
FKGEKVDVKDGVNKKMKMKMKQRERNSIQVMLLLIQHGANGLNLLEAQHVILVEPLLNPA
AEAQAISRVHRIGQTKKTLVHRFIVKDTVEESLYKLNKSRDGGSFISGNKRNQDQPVFTL
KDVESLFKVSPSTIQQQKNQDNKDSDLMHLPPGVAAAIAAERRLMDQTKQVDEAGRGPS
NT seq
4860 nt
NT seq
+upstream
nt +downstream
nt
atgggtagaagaaagcaaacacagcctcgtagggcacaggctactgttggcaacaatggt
gtttctaaagaggatttttgcaatccagacacatcccctgctttaaaaaccgagcattct
ggtaacaacaatccgttttacattgaagtcgatagagataactgggtgtcgaaagagcat
tatgacatctcagaagtgattctgacaaatttgaatgtaagtgaagagtgttatgataga
aaatacgaggatcaaaattttatcaatgaagaaaagtataactttaggtttcggttgaac
ggtgtaataaaaccattgcatatccctgtcttatctacttctgatatctatctggaattc
attgagaagcgagtggacatggaagcacatgtgatggtaacaggaaattttgatgggcct
agtgaaggtgtttcagggcttgttcacttggttagtatgaagtttttgactttgaggcct
actacagggttgactttttcagggaatttgtcatctattagattaagagtagagatacaa
aagtgtacatttgagggttctgagtcattttttgggactacaaggcagatatggaagaag
agtatgatgaatgtcatggcttggctacgccctgaagtaactacctcagaggctagatat
ggatataaggtacctgaagacatggagattggcctacaactaaatgaaaatacgaaagga
tccaggtttgatgtatctggtttttatgaagcaataaaaccctcaaaggataacccgatg
ctaatggatgacttgcctgacttgctccctgagcttagaccatatcaaaggcgtgcagct
ttctggatggttgaacgagagaaaggaactttcagacatctgagagaaagtcaacaaagt
caatctgtttcacccctatgtgtccctgtggatttagttgattcctgctttaaaatatat
tacaattcatttaacggaagtgtttcaatgaatcttgagaactgttcatcttatgttgtt
ggtggtattcttgcagatgaaatgggtctaggaaaaaccattgagctgcttgcttgtata
tttgcacatagaaaatcggacatagatgctgatgatataagaaacaagacaatacaagtt
gctggagagcagaaatctaacatcaaaagaatgaagaaagaacgtgttgaatgtgtatgt
ggggctgtaagtgaaagctcaaagtataaaggtttatgggtacaatgtgatgtctgtgat
gcttggcaacatgcagattgtgtaggctatcaatataaagaaacaaattcagaaccaata
aaagattcagaaagtctgaacggtgattcaagaaaacgcaaaagttataaaggctccaaa
gtcgttatctgtgatggggcccacatttgtccattttgcttagaactgagtcaagcaacc
ggttcccctgttcctactggtgcaactcttgtagtatgtccagctccaatattgccacag
tggcatgctgaaataactcgtcatacaagtccaggttcactaaaagttgttgtgtatgaa
ggagtaaaaccaagttcactttataataataccacatctgttacgaaaattgatgaactg
attaatgctgacattgtgttaacaacatatgatgtgctgaaacaagacttatctcatgat
tctgaaaggaatataggggataggcgacttttgagataccagaagaagtaccctgtgatt
ccaacttttctgactcgaatattctggtggaggatttgtttggatgaggctcaaatggtg
gagagtaatgctgctgctgcaacagaaatggcaatgcgcttaccttgtatgcatcgttgg
tgtgttacaggaaccccaatacaaagaaagctggatgacttatttgggctcttaaggttt
cttaaagcaactccttatgatgttttcaagtggtgggttgatgttattaggaatccttat
gagatgggagatgcaggggctgtagaatatactcacaatctctttaaacaaataatgtgg
agatcctcaaaatcacatgttgctgaagagttgcaccttcctccacaagaagaatgtctc
acttggctatccctcacaccaattgaagaacacttttatcagaggcaacacgagacctgt
ctcacatatgctagggaagtcatccaaagtttcaaaagtagtattcctgaagaagaagct
tcaggaaatgattcatcggattctttccttacacatgtggaggctgcaaaacttttgaac
tccctcttgaagctaaggcaagcatgttgtcatcctcaagtgggaagttcaggcgtacgt
tcactgcagcagtctcccatgacaatggaggagatactaatggttcttgtaggtaagact
aaagtagaaggggaggaagccctgaggaagttggttgttgcattgaatggacttgcaggg
attgctattattaaacaagattttcctcaagctatatcattatataaagaagcacttgaa
ttagcagaagagcattcagaagatttcagagttgaccctctgttgaacattcacatacat
tataatcttgctgagatactccctttaaccaccaactctatacaaaagtttaattcaggt
gaacagaatcctggaagttgtgaaggtaacatgtgcaagacatgtgatgaggatagacca
ttttctctatccagttgtaccagttaccaatctttgcagatcacatgcaacaatttaaag
caaaagtttttgtctgttttcaattcaagattgtccatggctcagctggaattcaggaaa
tcatatgacttggttagtaatggacttaaagatagaagacaccaacatactgcttggtgg
gctgaagccttgcaatatatcgagcaaaataaagattcttcaactgatttcatcagaaag
ataggagatgctgtctctgagactcttaacacttctagaacatcaagactcgcatcccgg
tttcagagcataactgctctcaagtatcatatccagagtggtctggaaaaattggaagat
tctagaaggactttgctggatagactgttggaagttgaccagagcatggagaatccaagt
atagaggatgtagaacgtgtgagatattgtccaaaatgccaggtcaatggagaggggctc
atatgtgtacactgtgaactagatgagttatttcaggcatatgaggcgaggctgtttcga
tttaacaaaggacatggtggaggggtgatttcatctgctgacgaggcggttgatttaagg
aaaaaagtgtcggctttaaatcggttctattggactttgtcacagcctgacaaagctcca
ccaccatcaagtaatgaagatgaagggaagaaaagggatgttggggagaaagttatggtt
tctaaatctccttcagagctggaagttgttcttggtgttataaagagctattcgaaggct
caattaggtaaagaagccatgtcagcagccagaaagcatctatctcttcttgagggaatg
cgtaaggagtatggtcatgcaagatccttggcacttgctcaagctcaagtgcttaatgct
catgatgagatatcaatggcaacatcacgattacgccttagagaaaatgaggatgataaa
tccattgatgctttgagtctggaagagctagaaacagcaaacgttgaaaattcaagtgaa
aagtttgttgctttatcctcgttattgcgtgtgaaagggcaacttcggtatttgaagggt
ttggtacagtcaaaacaaactgttgatgatccatctcatgaagttatgatgaattctaat
actaatttggtgaaagagggattaggcgatgacatgtgtcctgtttgtcaagataagatc
accactcagaagatggtttttcagtgtgggcatcttacatgttgtaaatgttttattgga
atgagtgagagggggatgagtcaggctgataagaaatggatgatgtgtccaacatgtaga
caacccacagaatatgggaacgttgcttttgttgatgatgagcaaaaaccacctgatgtt
tctgttactgcttttaaaacctcagaagcttctgtgactgtcaacggttcatatagcacc
aagattctagcagtcacaaggagaatactgtgtatcggttccacaaatccaacagacaaa
attcttgttttctcaagttggaatgatgttcttgatgtactggaacatgcttttacagct
aatgatattagttttatcagaatgaaaggaggaaggaaatcacaagttgctatcagtgaa
tttaaaggagagaaagttgatgtgaaagatggtgtgaataagaaaatgaaaatgaaaatg
aagcagagagaaagaaattccattcaagtaatgctgctattgattcagcatggggcgaat
gggcttaatcttttggaagcacaacatgttattcttgtagagccgctactcaaccccgca
gcagaagcacaagccatcagcagggtccaccgcatcggacagaccaaaaagacactcgtt
catcgtttcatagtgaaggacacagtggaagaaagcttatataaactgaataaaagcaga
gatggtggttcgtttataagcggaaacaaaaggaaccaagatcagcctgttttcacactc
aaagatgttgagtctcttttcaaagtttctccatcaacaatccaacaacagaaaaaccaa
gacaacaaagattcagatttaatgcatctgccgccaggtgtcgccgctgctatagccgcc
gagaggaggctcatggaccagaccaaacaagttgatgaagcggggcggggcccatcatag
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