Lactuca sativa (garden lettuce): 111884035
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Entry
111884035 CDS
T05352
Name
(RefSeq) protein argonaute 4A isoform X1
KO
K11593
eukaryotic translation initiation factor 2C
Organism
lsv
Lactuca sativa (garden lettuce)
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111884035
03036 Chromosome and associated proteins [BR:
lsv03036
]
111884035
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
111884035
Chromosome and associated proteins [BR:
lsv03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
111884035
RNA interference (RNAi) pathway
RITS (RNA-induced transcriptional silencing) complex
111884035
microRNA pathway
RISC loading complex
111884035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piwi
ArgoN
PAZ
ArgoL1
ArgoL2
ArgoMid
Motif
Other DBs
NCBI-GeneID:
111884035
NCBI-ProteinID:
XP_023736132
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All DBs
Position
3:complement(250964470..250972707)
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AA seq
936 aa
AA seq
DB search
MDPENGNGDALPPPPPVPEDVVPIKAEPEKKKVMRVPMGRRGLATRGNKVQLLTNHFKVN
VSNVDGHFFHYSVALFYEDGRPIDGKGIGRKVLDRVHETYGSELAGKEFAYDGEKSLFTV
GALPRNKLEFTVVLENVTSNRNNGNASPGSPDNDKKRIRRSYQSKTFKVELSFAAKIPMQ
AIAQALRGQESENSMEALRVLDIILRQHAAKQGCLLVRQSFFHNDVKNFADVGGGVLGCR
GFHSSFRTSQGGLSLNIDVSTTMIIQPGPVVDFLIANQNVKDPYSVDWAKAKRTLKNLRV
KTSPTNTEYKITGLSEKPCNQQLFSLRQKSKDENGEFETLEVTVYDYFVNYRKIELRYSG
ELPCVNVGKPKRPTFFPLELCSLVSLQRYTKALNTMQRSSLVEKSRQKPQERMKVLTDAL
TLNKYHEEPLLKSCGISISNSFTQVEGRVLAAPKLKVGNGEDFFPRNGRWNFNNKKLVEP
TKIERWAVVNFSARCNIQSLVKDLIKCGGLKGIKIDEPFDAFEESPQNRRAPPLVRVEKM
FEMIMSKLPGAPQFLLCLLPERKNSDLYGPWKKKNLADFGIVTQCIAPMRVNDQYLTNVL
LKINAKLGGLNSMLCVEHSPSLPHVSKAPTIILGMDVSHGSPGQSDIPSIAAVVSSRHWP
LISRYRASVRTQSPKVEMIDSLFKKVSDTEDEGIMRELLLDFYTSSAKRKPDQIIIFRDG
VSESQFNQVLNIELDQIIEACKFLDDKWNPKFLVIIAQKNHHTKFFQQGSPDNVQPGTVI
DNKVCHPRNNDFYMCAHAGMIVSNTQHKTTLSFFLSLSNSNSNYMFLFLKIFEQGTTRPT
HYHVLYDEIGFSADDLQELVHSLSYVYQRSTTAISVVAPICYAHLAATQVSQFMKFEDHS
ETSSSHGGTGVTSAGAVAVPQLPKLQEAVANSMFFC
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggatccagaaaatggaaatggtgatgctttgccacctcctccacctgtcccagaagat
gttgttccaataaaagcggagcctgagaaaaagaaggtgatgagggtgcccatggggagg
cgtggtctggccaccagaggcaacaaggttcaactgttgaccaaccatttcaaagtcaac
gtctctaatgttgatggacacttcttccactacagtgtggcacttttttatgaggatgga
cgcccaatagatgggaaaggcattggaagaaaagtgcttgatagagtccacgaaacatat
ggttctgaattagcaggaaaggagtttgcttatgatggtgaaaaaagtttgtttactgtt
ggagctcttccaaggaacaaacttgaattcactgttgttcttgaaaatgtcacttcaaac
cgtaacaatggaaatgctagccctggaagccctgacaatgacaagaagagaatcaggcgt
tcgtatcaatcaaagactttcaaagtggagctgagttttgcagccaaaatcccaatgcag
gcaattgcacaggctctcagaggacaggaatctgaaaactccatggaagccttgagggtg
cttgatatcatcttaagacaacatgcagctaaacaggggtgtctgcttgttcgacaatct
tttttccacaacgatgtgaagaattttgctgatgttggaggaggtgttcttggatgcaga
ggattccattccagtttccgcacatctcagggtggtctatccctcaacatcgatgtgtct
actaccatgatcatccagcctgggccggtggttgattttctgattgcaaatcaaaatgtg
aaagatccctattctgttgactgggcaaaggcaaagcgtacactgaagaatctgagggtg
aaaaccagccctaccaatactgagtacaagataactggtttgagtgagaagccttgcaat
cagcagctgttttcgttgaggcaaaagtcaaaagatgagaatggtgaattcgagactttg
gaagttactgtttatgactattttgtgaattatcgcaagatcgaattgcggtattctggt
gaacttccatgtgtgaatgttgggaagcctaaaagaccaactttcttcccccttgagctg
tgttcattggtctctctgcaacgctacacaaaagcactcaacacaatgcaaagatcctct
ttggtggagaaatccagacaaaagcctcaagaaagaatgaaggttttaaccgatgcacta
acactcaataagtatcatgaggaacctttgttgaaatcatgtgggatttcaataagcaac
agcttcacacaagtggaaggccgtgttcttgcagctccaaagttgaaagtgggtaatggt
gaagacttcttcccgcgaaatggacgctggaactttaacaacaaaaaacttgtggagccc
acgaaaatcgaaagatgggctgttgtgaacttctctgctcgctgcaacattcagagctta
gtgaaagatctgataaaatgtggaggattaaaaggaatcaaaattgacgagccttttgat
gcgtttgaggagagcccacaaaacaggagggccccacctcttgttagggtagagaaaatg
tttgaaatgataatgtcaaagcttcctggtgcccctcagtttctactctgtttgttacct
gaaagaaagaactctgatctttatggtccttggaagaagaagaatctggctgattttggt
attgtgacccaatgcatagctcctatgagagtcaatgatcagtacctcacaaatgtcctg
cttaagatcaatgctaagcttgggggtcttaactcaatgttatgtgtggagcattctcct
tcccttccacatgtttccaaggctcccacaatcattctgggcatggatgtgtctcatggg
tcacctggccagtctgatattccatctattgctgctgttgttagctcccgacattggcct
ttgatctcccgctatcgagcttctgtaagaactcaatctccaaaggtggagatgatagat
tccctgttcaagaaagtttctgacactgaggatgaaggcataatgagggagcttctcctt
gacttctatacgagttctgcaaaacgtaagccagatcagataatcattttcagggacggt
gtgagtgagtcacaattcaaccaggtgttgaacattgaactggaccaaattatcgaggct
tgcaagttcctagatgacaagtggaacccaaaatttcttgtgataattgctcagaagaat
catcacaccaagtttttccagcaaggctctccagataatgttcaacctggaactgtgatc
gataacaaggtctgtcatcctcgcaacaatgacttctacatgtgcgcacatgctggcatg
attgtaagcaacacacaacacaaaacaacactttctttttttctttctttgtcaaattca
aattcaaattacatgtttttgtttttgaaaatatttgaacaggggacaaccaggcccact
cattaccatgttctgtatgatgaaatcgggttctcagctgatgatcttcaggagcttgtc
cactccctctcctatgtttaccagagaagcactactgccatatctgttgttgcacctatt
tgttatgcacatttggcagcgactcaggtgtcccagttcatgaagtttgaagaccactcg
gagacatcctctagccatggtggcactggggtgacatcagctggagcagttgcggttcct
cagctgccaaaacttcaggaggctgttgcaaactccatgtttttctgctaa
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