Lactuca sativa (garden lettuce): 111884307
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Entry
111884307 CDS
T05352
Name
(RefSeq) WD-40 repeat-containing protein MSI2
KO
K10752
histone-binding protein RBBP4
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03082
ATP-dependent chromatin remodeling
lsv03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
111884307
03083 Polycomb repressive complex
111884307
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lsv03036
]
111884307
Chromosome and associated proteins [BR:
lsv03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
111884307
Histone modification proteins
HAT complexes
HATB complex
111884307
HDAC complexes
Sin3A-HDAC complex
111884307
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
111884307
PRC2.2
111884307
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
111884307
Heterochromatin formation proteins
Other heterochromatin formation proteins
111884307
Chromatin remodeling factors
NuRD complex
111884307
NuRF complex
111884307
NuRF complex (fruit fly)
111884307
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1C_H4-bd
WD40_CDC20-Fz
WD40
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_EML_2
WD40_WDHD1_1st
WDR55
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_EML
WD_LRWD1
WD40_MABP1-WDR62_2nd
WD40_RFWD3
ANAPC4_WD40
Beta-prop_WDR35_TULP_N
Beta-prop_WDR90_POC16_2nd
DUF6922
Beta-prop_SCAP
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
111884307
NCBI-ProteinID:
XP_023736388
LinkDB
All DBs
Position
3:complement(64083419..64085332)
Genome browser
AA seq
398 aa
AA seq
DB search
MATVDNGGEEHHVEEEFRVWKKNTPFLYDLVVSHALEWPSLTVQWLPSEPSLDSDGSFAV
HKLILGTHTSDDCPNFLLVAEVHLPVNHSISLEGNLENHKIPKVEVIHRIHVDGEVNRAR
CMPQTPSIIAAKTSSSEVYVFDSTKQPLDHEGGSCEPDIKLRGHDKEGYGLSWNPFKEGY
LLSGSNDCKICLWDLSTMPDNKVLDAKHIYEDHGSVVGDVSWHLKNEFLFGSVGDDCKLM
IWDLRTNKHQQSVVVHEKEVNYLSFNPYNEWVLATASSDTTVGLFDMRKLTSPLHVLSNT
DEVFQVEWDPNHETVLASCADDRRLMVWDLNRIGDEQLEGEAEDGPPELLFSHGGHKAKI
SDFSWNKNKPWVISSVAEDNALQVWQMAESIYREDDDN
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggtggacaacggcggcgaagaacaccacgtggaggaggaattccgtgtctgg
aagaagaatacacctttcttgtacgatctcgtcgtctctcacgctcttgagtggccgtct
ctcaccgtccagtggctcccgtcagagccgtcgctggactccgacggttccttcgccgtt
cacaaattgatccttgggacacacacctccgacgactgtcctaacttcctactcgtcgca
gaagtccacttgccggtcaatcattcgatatcacttgaaggcaatttggaaaaccacaaa
atccctaaggtagaggttattcacaggatacatgttgatggagaggtgaacagggcacgg
tgtatgcctcagactccatcaatcattgcagcaaagaccagttcttcagaagtctatgta
ttcgactccacaaagcaacctttagatcatgaaggaggctcttgtgaacctgacattaaa
ctaagaggtcacgacaaagaagggtatggcctctcatggaaccctttcaaagaaggctac
ctcttaagtggctccaacgattgcaaaatctgcttgtgggatttgtctacaatgccagac
aacaaagttcttgatgcaaaacatatctacgaggatcacgggagtgtggttggagatgta
tcatggcatttgaagaacgaatttctattcggatctgttggtgatgactgcaagcttatg
atttgggatctgcgcacaaacaaacatcaacaatctgttgttgttcatgagaaagaagtg
aactacttatctttcaatccatataatgaatgggttcttgctacagcctcttcagataca
actgttggtctatttgacatgcgaaagctcacatcacctttacacgttttaagcaatacg
gatgaggtgtttcaagtggagtgggacccgaaccatgaaactgtgcttgcttcttgtgct
gatgacagaaggttgatggtttgggatctaaacaggattggagatgaacaattggaagga
gaagcagaggatggcccaccagagcttctgttttctcatggtggacataaggcaaagata
tctgacttttcatggaacaagaacaagccatgggtgatatccagtgttgctgaagataat
gctttgcaggtatggcaaatggctgaaagcatttatcgtgaagatgatgacaattaa
DBGET
integrated database retrieval system
