Lactuca sativa (garden lettuce): 111884374
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Entry
111884374 CDS
T05352
Symbol
EIF4A-III
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03013
Nucleocytoplasmic transport
lsv03015
mRNA surveillance pathway
lsv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111884374 (EIF4A-III)
09122 Translation
03013 Nucleocytoplasmic transport
111884374 (EIF4A-III)
03015 mRNA surveillance pathway
111884374 (EIF4A-III)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111884374 (EIF4A-III)
03041 Spliceosome [BR:
lsv03041
]
111884374 (EIF4A-III)
03009 Ribosome biogenesis [BR:
lsv03009
]
111884374 (EIF4A-III)
03012 Translation factors [BR:
lsv03012
]
111884374 (EIF4A-III)
Enzymes [BR:
lsv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111884374 (EIF4A-III)
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
111884374 (EIF4A-III)
mRNA cycle factors
Stress granule specific factors
111884374 (EIF4A-III)
Spliceosome [BR:
lsv03041
]
Complex C
Other components
EJC/TREX
111884374 (EIF4A-III)
Ribosome biogenesis [BR:
lsv03009
]
Eukaryotic type
90S particles
Helicases
111884374 (EIF4A-III)
Translation factors [BR:
lsv03012
]
Eukaryotic type
Initiation factors
eIF-4
111884374 (EIF4A-III)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
TniB
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-GeneID:
111884374
NCBI-ProteinID:
XP_023736450
LinkDB
All DBs
Position
3:complement(47863572..47866603)
Genome browser
AA seq
408 aa
AA seq
DB search
MAGTSVVPANRGRRNTMVDDEKLVFETSRGVEPIMSFDQMGIKDDLLRGIYQHGFEKPSA
IQQRAVRPIIEGRDVIAQAQSGTGKTSMIALTVCQIVDTASREVQALILSPTRELAAQTE
KQILAIGDFISIQAHACIGGKSVGEDIRKLENGVHVVSGTPGRVCDMIKRRTLRTRAIKL
LILDESDEMLSRGFKDQIYDVYRYLPPELQVCLVSATLPNEILEMTSKFMTDPVRILVKR
DELTLEGIKQFFVAVERENWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRENNFT
VSAMHGDMPQKERDAIMEEFRSGVTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIH
RIGRSGRFGRKGVAINFVKTDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atggcgggaacgtcagtggtaccggcgaacagaggacggcggaacacgatggtggatgac
gaaaagctggtctttgagacctcgcgcggagtggagccgattatgagctttgaccaaatg
ggaatcaaagacgatctactccgtgggatttaccaacacggattcgagaagccctcggca
attcaacagagagctgttaggcctatcattgaaggtcgagatgtcattgcccaggctcaa
tctggtaccggaaaaacctccatgattgcgcttactgtttgccagattgtcgacacagct
tcaagagaagtccaagctttgatcttgtcaccaacaagagagcttgcagcacagacagag
aaacagatattggctataggcgatttcatcagtatacaagcccatgcatgcattggagga
aaaagtgttggtgaggacattagaaagttagaaaatggagtccatgttgtttctggaaca
ccagggagagtctgtgacatgatcaagagaagaacattgcgaacaagagccattaaacta
ctaattctcgatgaatctgatgaaatgttgagcagagggtttaaggatcaaatttatgat
gtctaccgttatcttccaccagagcttcaggtgtgtttggtgtctgctactcttcctaat
gaaatattggagatgaccagtaaattcatgactgatcctgttcgaatcctggtcaaacgt
gatgagttgactcttgagggaataaaacaattctttgttgctgttgaaagagaaaactgg
aagtttgatactctgtgtgatctgtatgatactctcacaatcacacaggctgtaattttc
tgtaacacaaagcgaaaggtggattggctaactgagaagatgcgtgagaataactttact
gtatcagccatgcatggagatatgcctcagaaggagcgagatgcaattatggaagagttt
cgatctggtgttactcgtgtcttgattacaacagatgtgtgggccagggggttggatgtt
caacaggtttctttggtgattaactatgacctcccaaataaccgagagctttatattcat
cgtattggtcgatccggtcgatttggacgaaagggtgttgctattaatttcgtgaagacg
gatgatatcaagattttaagagatatagagcagtactacagtacccaaattgatgaaatg
ccaatgaatgtggcagatttgatataa
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