Lactuca sativa (garden lettuce): 111884395
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Entry
111884395 CDS
T05352
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111884395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111884395
03012 Translation factors [BR:
lsv03012
]
111884395
Enzymes [BR:
lsv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111884395
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111884395
Translation factors [BR:
lsv03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
111884395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
R3H
HA2_C
HA2_N
Ank_2
nSTAND3
Ank_5
AAA_22
ATPase
Ank
AAA_25
AAA_19
Rad17
T2SSE
Dynamin_N
AAA_7
AAA_16
AAA_23
ABC_tran
Motif
Other DBs
NCBI-GeneID:
111884395
NCBI-ProteinID:
XP_023736481
LinkDB
All DBs
Position
3:complement(49757820..49764887)
Genome browser
AA seq
1229 aa
AA seq
DB search
MMPAPSSSSTKKRRKRGGGQQQQQQQQQQNPVIAESTRIHIRRTLEQFRASNDEAYTFEA
NLTNFERAEVHKLCRKMGMKSASSGPKSGNRRVTVYKFKGKPKNVKTNNDLTSFTFSEEG
KVVLRDFFSLYPPGDQGEGEKIMSTSKKNTDNIRTKTDDILCKPSMKKAEIAEKFNSVVA
RMESDLKLKQITEDRYKLPIASFKDVITSTIESHQIVLISGETGCGKTTQVPQYLLDYMW
GKGSACKIVCTQPRRISAISVAERISHERGESIGESVGYKIRLENKGGRHSSIVFCTNGV
LLRVLVRAGNGRSGREASAKMVKDTFPDITHIIVDEIHERDRFSDFMLTIIRDMLPLYPH
LRVVLMSATLDAERFSQYFGGCPIIRVPGFTYNVKRLYLEDVLLLVKSKKDCHLDCTSKT
NVDENSQLTEEFKLALEEAIHIAWSTDEIDSLLDIVSSGGENFLNFQHSVTGVTPLMVFA
RKGRVGDMCMLLSLGANCHLQDKEGKTALAWAQHENQNETSEILRKHVNGTSVGSKDSKE
EQVLLDRYLQDVNPELIDVILIEQLLRKICTESQDGAVLVFLPGWDDINKARDRLTSSAL
FKDSSKFLILALHSMVPSIEQKKVFKRPPQGCRKIILSTNIAETAVTIDDVVFVIDSGRM
KEKSYDPYNKVSTLQSSWISQASAKQREGRAGRCQPGICYHLYSKLRAASLPEFQVPEIK
RTPIEELCLQVKILDPGCKIEDFLKKTLDPPVSEAIHNAITVLQDIGALSPNEELTELGE
KLGSIPVHPLTSKMLLFAISMDCIDPALTLACANDYRDPFTLPMLPNDKRKAANAKCELA
SLYGGHGDQLATIAAFECWKNAKQRGQESRFCAQYFVSGGVMNMLFGMRKQLQNELYRNG
FIPENSSRFSANAQDIGVIHAVLVAGLYPMVGKLHPPKKNAKRIVIENANNDKVRLHPQS
VNSKLTFKKKDYCPLVIYDEITRGDGGLHIKNCSIVGPLPLLLLATEIAVAPLDDVSDDD
DDDASFGGSDDEEGYDGEKGDRLMSDPENVVKVVADRWLSFESTALDVAQIYCLRERLSA
AIMFKITHPGKDLPELLAASIHAIANVLSYDGLAGINAPLVSVDSLTSMVRETDIGQPPA
GGNKGKFKNSNNFLGSLLYNNDSQRQWSGRPRHHGHHHPSTSSYSTQRNQHQIQNSQGGM
GNVHERNRNEMNGSSLRVDSLKRHRGSRA
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atgatgccagcgccatcaagttcatcaaccaagaaaaggcgaaagagaggcggaggacaa
caacaacaacagcaacagcagcagcaaaaccctgtgattgctgagtccactcgtattcat
attcgacggacacttgaacagtttcgggcatccaatgatgaagcatacacatttgaagcc
aaccttacaaactttgaacgtgctgaggtacacaagttatgcagaaagatgggtatgaag
tcggcaagttctgggcctaaatcagggaacaggcgtgttacagtttacaagttcaagggg
aagccaaagaatgtcaaaaccaataacgatctcacttcttttacattttcagaagaggga
aaagtagttttgagggactttttttctctttatccacctggtgatcaaggggagggtgaa
aagatcatgtccacatctaagaaaaatactgataacatacgaacaaagacggatgatatt
ctttgcaaaccttcaatgaaaaaggctgaaattgctgaaaagtttaattcagttgttgcc
agaatggaatcagacctcaaattgaaacagattactgaagataggtacaaacttccaatt
gcatcctttaaggatgttattacatcaacaatagaatctcatcagattgttctcatatct
ggtgaaactgggtgtggaaagacaacacaggtgcctcagtatttgttggattatatgtgg
ggtaagggcagtgcatgtaaaatagtctgcacccaaccacgtcggatctctgcaatatca
gttgctgaaagaatatctcatgaaagaggtgaatctattggagagagtgttggatacaag
ataagattggagaacaaaggtggaagacattcatctattgtgttttgcacgaatggtgtc
ttattgagggtcttagtaagagctggcaatggaagatctggaagagaagcctcagcaaag
atggtcaaggatacatttcctgacatcactcacatcattgtggatgaaattcatgagagg
gacagattctctgattttatgctaacaatcatcagagatatgcttccattatatcctcat
ctacgtgtggtattgatgagtgctacacttgatgctgagcgattttctcagtactttgga
ggttgcccaatcatacgtgtccctggcttcacttacaatgtgaaaaggctctatttagaa
gatgtacttttgcttgtgaagtcaaaaaaagattgtcaccttgattgcacttcaaaaaca
aatgtcgatgaaaactcccaattaactgaagaattcaaacttgcccttgaagaagcaatt
cacatagcttggtcaaccgatgagattgactctcttttagatattgtttcaagtggtgga
gaaaattttctcaattttcagcattctgtaactggggttacaccattaatggtgtttgct
agaaaaggaagagtaggtgacatgtgcatgcttctctctttgggtgccaactgtcattta
caagataaagaaggaaaaaccgcacttgcgtgggcccaacatgaaaaccaaaatgaaact
tctgagattttaagaaaacatgtaaacggaacctcagtaggttccaaagattccaaagaa
gaacaggttttactcgatagatacttacaagacgtgaaccctgaattaatcgatgttatc
cttatagaacaattattaagaaaaatatgtacagaatcacaagatggagctgttcttgtt
tttctaccagggtgggatgatataaataaagcacgtgacagattaacctctagtgctctg
tttaaagattcttccaagtttttgatattggctcttcattccatggttccatctatagaa
caaaagaaggtcttcaaaaggcctccacagggttgcaggaaaatcattctgtcaaccaat
atagctgagacagctgtcacgattgatgatgttgtttttgtgatagatagtggaaggatg
aaagaaaaaagctatgacccgtataataaagtttcaactcttcaatcttcttggatctca
caagcaagtgcaaagcaacgagagggtcgggcaggaagatgccagcctggaatatgttat
catttgtattcaaaacttcgggcagcttccctgcccgaattccaagtgcccgagattaag
agaacaccaattgaagaactttgtttacaggtaaagattcttgatccaggatgcaaaata
gaagatttcttgaaaaaaacattagatccacctgtttcagaagctatccataatgcgatt
actgttcttcaagatattggagctttatcaccaaatgaagaactcacagaactcggggaa
aaactcgggtctatccctgttcatccattaacaagcaaaatgcttctttttgctatatcc
atggactgcattgaccctgcgttgactttagcttgtgcaaatgactatagagaccctttc
acccttccaatgttaccaaatgataaaagaaaagcagcaaatgctaaatgtgagttagct
tcattatacggtggacatggtgatcaattagccacaatagcagcttttgaatgctggaaa
aacgccaaacaaaggggacaagaatcgagattctgtgctcaatattttgtgtctggaggt
gttatgaatatgttgtttggaatgcgaaagcaacttcaaaatgaactttatagaaacgga
tttattcctgaaaattcttcaaggtttagtgcaaatgctcaggatattggtgtgattcat
gcggttcttgttgcagggttgtaccctatggtgggaaaattacatccaccgaaaaaaaat
gcaaaaagaattgttattgaaaatgcaaacaatgataaggtgagattgcaccctcagtca
gtcaactctaagttgactttcaagaagaaagattattgtcctttggtgatatatgatgag
ataacacgtggagatgggggtttgcatattaagaattgtagtattgttggaccacttcct
ttgttattgttggctactgagattgctgtggccccacttgatgatgtcagcgatgatgat
gatgatgatgccagctttgggggtagtgatgatgaagagggttatgatggggaaaaggga
gatagacttatgtctgaccctgagaatgtggtcaaagttgttgcggacaggtggctttca
tttgagtctacagctcttgatgttgctcagatatattgtttaagagaaaggctgtctgct
gcaatcatgtttaagattacacatccaggaaaagatcttccggaacttcttgcagcctct
atacacgcaatagcgaatgtactttcttacgatggcctcgctggcatcaacgcgccactt
gtatccgttgactcgttgacttcaatggtaagagaaaccgacatcgggcagccgccagct
ggcggaaataaaggcaaattcaagaattcaaacaactttcttggatcgcttttatataat
aatgattcacagagacaatggtcagggagacccagacatcatggtcatcatcatccatct
acttcttcttattctacacaaagaaatcaacatcagattcagaattcacagggtggcatg
gggaatgttcatgagagaaacaggaatgaaatgaatggttcgagtttgagggttgactct
ttgaagcgccatcgtggaagcagagcttga
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integrated database retrieval system
