Lactuca sativa (garden lettuce): 111884452
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Entry
111884452 CDS
T05352
Symbol
LOC111884452
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111884452 (LOC111884452)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111884452 (LOC111884452)
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111884452 (LOC111884452)
mRNA degradation factors
5'-3' decay
Decapping complex
111884452 (LOC111884452)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
111884452
NCBI-ProteinID:
XP_023736546
LinkDB
All DBs
Position
3:48567697..48571443
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AA seq
746 aa
AA seq
DB search
MERSGSKDLNSIIGVSLSDDKRFDASQYAFFGQNLSDKADFGCLEVEEDDDNPLNGLGDD
EYRLFDREEEPGVGSLSDLDDLSTTFSKLNRSVSGPRHPGVIGDRGSGSGSISRESSSAS
EWLQERELPEWLDHHISDTETHHGTRKWSSQPHLYSDSKPLYRASSYPQEQHQFFSEPVL
VPPPAQTNLSSPRQHSHLLNLSSAITNPHLPLNLSRYNQIIPPGLSRYAQAQAQNNWANT
NNMLHVDHAGLLSNTFQQKLLHNGSLSPHFIPPGQHLIGPFSPLQLCPVPSRPLHLTKYE
PKTKSTQKKHSGRLSRQGSDGSGNQKNDKFRVQFKSKYMTSEEIESVLRMQHAATHSNDP
YIDDYYHQARIAKISSDSSSKSKSRFCPSHLKDSPSRSSRNSTESHHVNIDSHGRISLTF
IRRPPPLLEVEPPPGSGGGSDQKSEKPLEQEPMLAARITIEDCLCLLLDVDDIDRLLQFS
QDNGAQMRQRRQILLEGLATSLQLVDPLGKTNNSVGLTSKDDIVFLRLVSLPKGRKLISR
YLQLLSPSSELARIVCMAIFRHLRFLFGGLPSDTGALTTTTALVKTVSTCISAMDLNSLS
ACLAAVVCSSEQPPLRPLRSPAGDGASVILKAVLDRATQLLSNRGVQNPMLWQASFDAFF
GLLTKYCLSKYDSLVQAMYTQVPPSTEAARAIGREMPVELLRASLPHTDSNQRKMLVDFS
QRSMQVAGLTGHRGSGGQVAQESVRG
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
atggagagatctggtagtaaagacttgaacagcatcattggggtttccttatcagatgac
aaacgctttgatgcatcacagtatgcttttttcggtcaaaatctttcagacaaggctgat
ttcgggtgtttagaggttgaagaagacgatgataatcctttaaacgggctaggtgatgat
gaataccgtttgtttgatagagaagaggaaccaggggttggttccctatcagatttagat
gatctgtcaactactttttcaaagttaaacagatcagttagtggacctaggcatcctgga
gttattggtgaccgaggatcaggatcgggttctatttcaagggaaagttcatctgcctct
gaatggttacaagaaagagaattacccgagtggttggaccatcacatctctgacactgaa
acccaccatgggacccgcaaatggtcatcacaaccacatctctactcagattcaaagcca
ttatacagagcttcatcataccctcaagaacaacaccagttcttcagcgaacccgtttta
gtccctcctcctgcccaaaccaatctctcctcgccacgtcagcattcccatctcttaaac
ctctcatccgccatcaccaatccccacttacccttaaacctctcccgttacaaccagata
atccctcccggcctttcccgatacgctcaggcccaagcccaaaacaactgggccaatacc
aataatatgttacatgtggatcatgcgggattactaagcaacacgtttcaacagaaactt
cttcataacgggtcgttgtcgccccattttatacccccgggtcaacaccttatcggccct
ttttccccgctccaactctgcccggttccttcacgcccattgcatctgactaaatacgaa
ccaaaaaccaaatccacccaaaagaaacactccgggcgtctctcccgccagggctccgat
ggtagtggtaatcagaaaaacgataaattccgtgtacaatttaaatcaaaatacatgact
tctgaagagattgaatctgttttaagaatgcaacatgctgcaactcacagcaatgatccg
tatatagacgattactatcaccaagcccgtatcgcgaaaatatcttccgactcgagttcc
aagtcgaaatcccgtttctgcccttctcatctcaaagactcgccttctcgatcctcgcgt
aacagtacagaatcacatcatgtcaatattgattctcatggaaggatttcattaaccttc
atccgccgcccgccacctctccttgaagtcgaaccacctccgggttccggcggtggttcc
gatcagaaatctgaaaaaccgttagaacaagaaccgatgcttgcagcccgaatcacaatc
gaggattgtctttgtcttcttcttgatgtagacgacatcgatcgcctcctgcaattttct
caagataatggagctcaaatgaggcaaagaaggcagattcttctagaagggttggctaca
tcgcttcagctcgttgacccactcgggaaaactaacaactcagtcgggttgacttctaag
gacgatatcgtctttttacgattagtctctctccctaagggccgaaaactgatatcaaga
taccttcaacttttatcaccaagcagtgagcttgcacggatagtatgcatggctatattc
cgtcatttacgcttcctatttggcggtcttccttccgacaccggagctctgaccaccacc
accgctttagtgaaaacagtttccacatgtatcagtgcaatggatttgaattctctgagc
gcttgtctagcggcggttgtgtgttcttcagagcagccgccacttcggccgctacggagt
ccagctggagatggtgcttcggtgattctgaaagcggttttggatcgggccacgcagttg
ttaagtaaccgtggtgtgcaaaacccgatgctgtggcaggcttcatttgatgcgtttttc
gggctgttgactaagtattgtttgagtaagtatgatagtttagtgcaagccatgtatacg
caagtgccgcctagcacggaggcggcaagggctatcgggcgggagatgcccgtggagctt
ttgcgggctagtcttccgcatacggatagtaatcagaggaagatgctggttgacttttct
cagaggtcaatgcaggttgcagggttgaccggtcatagagggagcggtggtcaagttgcg
caggaatcagtaagaggatga
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