Lactuca sativa (garden lettuce): 111884813
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Entry
111884813 CDS
T05352
Symbol
LOC111884813
Name
(RefSeq) protein PAT1 homolog 2
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111884813 (LOC111884813)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111884813 (LOC111884813)
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111884813 (LOC111884813)
mRNA degradation factors
5'-3' decay
Decapping complex
111884813 (LOC111884813)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Serglycin
Motif
Other DBs
NCBI-GeneID:
111884813
NCBI-ProteinID:
XP_023736882
LinkDB
All DBs
Position
8:45067448..45071048
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AA seq
758 aa
AA seq
DB search
MERSDSKDWSSINKGSSSDDKLFDASQYAFFGRPTTEKVEFGCLEEDEDNPSTGVPDDEY
HLFDREEEPVAGSLSDLDDLSTIFSKLNRSVSGPRHPGVIGDRGSGSISRESSSASVDLP
EWLDQHISDTESSHGSRRWSSQSHLPSDPKPLYRASSYPTEQHQFFTEPILTPTSSLPSF
SPGAHNSLPSPRHRSHSHSHSHSQMPFSDLNLSPLSNTSSLHLTSVPHGSRFGSSRTHPV
HPGLTQYSQTQNQWANQVLANNLQQKLLLSQCFMSPHSLRQHTFNPFALQPYLYDTNIPS
HSLTKYGLNDTRDQRKSKHSGRISRQGSDNTNQKSEKCRVNFRSKYMTSEEIESILNMQH
AATHSNDPYINDYYHQARLAKKDTRSKNRFHPAHFKDTPVRSRNGSGSGSGLGSGSDSQP
QITIDSHGRISFSLIRRPQPLFEPDNPSNDGEKRSEKTLEQEPMLAARIMIEDALSVLLD
IDDIDRLLQSQPQDGGSPARQRRQVLLEGLAAALQLVDPLGVNGSGLAPKDDMVFLRVIS
LPKGQKLMSRYLNLLSPTSDLARIVCMTIFRHLRFLFGGVPNETVTTLAKTVASCITSMD
LNSLSACLAAVVCSPEQPPLRPLGSPSGDGASVVLKAVLERATQLLTGVNMGMQNPTLWQ
ASFDAFFGLLTKYCLSKYDSLVNAMYAQIPPTTEIVFSEAAKAISREMPVELLRASLPHT
DDRQRKMLVDFSQRSMHVAGFNGHKGGSGQVAPESVRG
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atggagagatctgatagtaaagactggagtagcatcaataagggctcttcctcagatgat
aaactctttgatgcttcacaatatgctttttttggtcgacctactactgagaaagttgag
tttgggtgcttagaagaagacgaagataatccttcaactggagttcctgatgatgaatac
catttatttgacagagaagaggagccagttgcaggatctctatcggatttagatgatctg
tcaactatattttcaaagttaaacagatcagtaagcggacctagacatcctggagttatt
ggtgatcgagggtcaggatctatttcaagagaaagttcatctgcttcagtagacctacca
gagtggctagaccaacacatctcagacacagaaagcagccatggaagcagaagatggtct
tcacaatctcatctcccttcagaccctaaacccttatacagagcttcatcataccctaca
gagcaacaccaattcttcacagaacccatactcacaccaacctcatctctcccttcattt
tcacccggggcccacaacagtctcccctcgccacgtcatcgttcccattcccattcccat
tcccattcccaaatgcccttttcagaccttaatctctcccctttatcaaacacctctagt
cttcacctaaccagtgtcccacacgggtcgcgttttggctcatcccgaacccacccggtc
caccccgggttaactcagtactctcaaacacaaaaccaatgggctaaccaggtgttagcc
aacaatcttcaacaaaagctgctcttgtcccaatgtttcatgtccccacattcgcttcgt
cagcatacattcaacccgtttgctcttcagccatatttatatgacacaaatatcccttct
cattcattaactaaatatggtctgaatgacacaagagatcaaagaaagagcaaacacagt
ggacgaatctcaagacagggttccgataataccaatcagaaaagtgaaaagtgtcgggtc
aacttccggtcaaaatacatgacctctgaagagatcgagtcgattctcaacatgcaacat
gctgcaactcatagtaatgatccgtatataaacgattactatcaccaagcccgtttagcc
aagaaagatacccggtcaaaaaaccggttccacccggcccatttcaaagatactccggtc
aggtcacgtaacgggtccgggtccgggtccgggttagggtcagggtcagattcacagcct
cagatcaccatcgattcacatggaagaatctcattctctctcatccgtagaccacaaccc
ttgtttgaacctgataatccttccaatgatggtgagaaaagatcagagaaaaccctagaa
caagaaccgatgcttgcagctcgaatcatgatcgaggatgccctttctgtgcttcttgac
atagacgatatcgatcgtctcctccaatctcagccacaagacggtggttctccggcgaga
cagaggcggcaggtgctcctagaagggctggcagcagctctccagttggttgacccgttg
ggggtaaacgggtccgggttagccccgaaagatgacatggttttcttacgggtaatttct
cttccaaaaggtcaaaaacttatgtctcgatacctcaatcttctctctcctacttccgat
cttgcaagaatcgtatgcatgacgatattccgtcatttgagattcttattcggaggggtt
cctaatgaaactgtcactacacttgcgaaaactgtcgcgagttgtataacttcaatggat
ttgaattctctgagcgcgtgtttggctgcggtggtgtgttcgccggagcaaccgccgctc
cggccactcgggagcccttccggcgacggtgcgtcggtggttttgaaagcggttctggaa
agggcgactcagttgttgaccggagtcaacatggggatgcagaatccgacactttggcag
gcttcatttgatgcgttttttgggcttttgactaaatattgtctgagcaagtatgatagt
ttggtgaatgctatgtatgcacagattccaccaactacagagattgtgttttcagaagct
gcaaaggccattagtagagaaatgcctgttgagcttcttcgtgctagtcttcctcatacc
gatgatcgtcagaggaagatgttggttgacttttctcagaggtcaatgcatgtcgccgga
tttaatggacataagggcggcagtggacaggtggcgcctgaatccgtaagaggatag
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