KEGG   Lactuca sativa (garden lettuce): 111884858
Entry
111884858         CDS       T05352                                 
Name
(RefSeq) UBP1-associated protein 2C
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111884858
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lsv03019]
    111884858
   03041 Spliceosome [BR:lsv03041]
    111884858
Messenger RNA biogenesis [BR:lsv03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     111884858
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     111884858
Spliceosome [BR:lsv03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    111884858
SSDB
Motif
Pfam: RRM_1 RRM_7 AbiGi
Other DBs
NCBI-GeneID: 111884858
NCBI-ProteinID: XP_023736926
LinkDB
Position
4:79282716..79286442
AA seq 419 aa
MELSKKRKTEENGVLYTTAGPNDVVAPPLSLSSCSLSPQDARKILEPFTKEQLLDVLQTV
VVRDVAVLDAVRSIADSDPTQRKLFIRGIGWETTSEKLRSIFSSFGELEEAIVITDKNTG
KSKGYGFVTFKHIDGTILALKEPSKKIDGRITVAQLAAAKDSNNVDVSTRKIYVGNVPFE
LSSERLLSHFSSYGEIEEGPLGFDKQSGKQKGFAFFVYKTEEGARNSIVDPMKNIDGHQV
NCKMATDGKKGKGGGPQGPTGMPDSAPPSGSMPGSMNTGYGMPGGLTSYGGYSSGRPLPH
QNPQMNSSLPSTVGGSHGYGNQGPPSYGGGSGGGYGGGGGYGSGGYSSGSHYGGGAASGD
YPGYNNYGSSRIPPSSGGGYGGGDGGNYGGGGYSSGSQMPPAGPRGPPSQMYQGGPPYY
NT seq 1260 nt   +upstreamnt  +downstreamnt
atggagctatcgaagaagagaaagacggaagagaacggcgttctgtacacaacggccggc
cccaacgatgtcgttgctccgccgctgtccctctcttcttgcagtctcagtccccaagat
gcacgcaagatcctcgaacccttcaccaaagaacagcttcttgacgtcttacaaactgtc
gtcgtacgcgatgttgctgttttagatgccgtccgctccatcgcagactctgaccccacc
caacgtaaactcttcatccgtggcatcggttgggaaaccaccagtgaaaagctccgatcg
atcttttcgagtttcggagaactcgaagaggctattgtgataaccgataaaaacacaggc
aaatcgaaaggttatggatttgttacatttaagcatatagacggtacaattttggcttta
aaggaacctagcaagaagatcgatggtcgtattacggtagcgcaattagcagcggctaaa
gattcgaataatgttgatgtgtctacgaggaagatttacgtcggcaatgttccttttgaa
ctttcgtcggagagattgttgagtcacttttcatcgtatggtgagattgaagaagggccg
ttagggtttgataaacagtccgggaaacaaaaggggtttgcgttttttgtgtataagacg
gaggaaggcgccaggaattcaatcgttgatccgatgaagaacatcgatggacaccaagtt
aactgtaaaatggccaccgatgggaagaaggggaaaggaggtgggcctcagggaccaact
ggaatgcctgattctgctcctccatctggttcgatgccagggtccatgaatactggctat
ggtatgccgggtgggttaacatcatatggtggatattcgagtgggcgtcctcttcctcat
caaaatccacagatgaactcttcattgccttcaacagttggtggtagtcatggttatggt
aatcagggcccaccttcctatggtggtggtagtggcggcggctacggtggtggtggtggt
tatggtagcggtggatacagcagtggctcacattatggaggtggtgctgcctccggggat
taccctgggtataacaattatgggtcgtctagaattcctcctagctcaggtggtggttat
ggtggtggtgatggtggcaattatggtggtggtggatacagcagcggctcacaaatgcca
ccagctggtccaagaggtccacctagccagatgtatcagggtgggcccccttactactga

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