Lactuca sativa (garden lettuce): 111885620
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Entry
111885620 CDS
T05352
Name
(RefSeq) transcription initiation factor IIB-2
KO
K03124
transcription initiation factor TFIIB
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
111885620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsv03021
]
111885620
Transcription machinery [BR:
lsv03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
111885620
Prokaryotic type
Archaeal type
TFB
111885620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cyclin_N
Ribosomal_S27e
DUF7573
HTH_Tnp_ISL3
WHD_GDS1
TFIIB_C_1
Zn_ribbon_8
DmmA-like_C
Motif
Other DBs
NCBI-GeneID:
111885620
NCBI-ProteinID:
XP_023737630
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All DBs
Position
8:124561056..124562814
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AA seq
311 aa
AA seq
DB search
MDAYCSDCKKSTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANEAGDNDPVRVGG
PTNILLNDGGLSTVISKPNGVTSDFLSSSLGRWQNRGSNPDRSLILAFKTIATMSDRLGL
VATIKDRANEIYKKVEDQKSSRGRNQDAILAACLYIACRQEDKPRTVKEICLVANGATKK
EVGRAKEYIVKQLKLEMGQSVEMGTIHAGDFMRRFCSNLGMTNQTVKAAQESVQKSEQFD
IRRSPISIAAAVIYIVTQLSDDKKPLKDVSLATGVAEGTIRNSFKDLYPHLSKIIPTWYA
QEEDLKNLNSP
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atggatgcctactgctccgattgcaagaagagcacggaggtggtgttcgaccactctgcc
ggagatacggtctgctccgagtgcggactcgttctcgagtcccactccatcgacgagaca
tccgagtggcgtacctttgccaacgaggccggagataacgatcctgtccgtgtcggtggc
ccgaccaatatactcctcaacgatggcggcttgtcgacggtgatttcaaaacctaacggc
gtaactagcgatttcttatcctcctcgttaggcaggtggcagaatcgaggctccaatccc
gaccggtcgcttatcttggcgtttaaaacaattgcaacgatgtctgataggttaggcctt
gttgctacaataaaggatcgagctaatgagatatacaaaaaggtagaagatcagaagtca
agtagaggacgaaaccaggacgccattttagcagcttgtctgtacattgcctgtcgtcaa
gaagataaaccacgaactgtaaaagaaatctgtttggttgccaatggagccacaaagaag
gaagttgggcgtgcaaaagagtacattgtgaagcaactgaagcttgaaatgggtcaatca
gtggaaatggggactatacatgctggcgattttatgagacgattttgttcgaatcttggt
atgacaaatcaaactgttaaagctgcccaagaatctgtacagaagtctgaacagtttgat
ataaggagaagtccgatttctattgctgctgctgttatttacattgtgactcaactttct
gacgataagaaacccctgaaagatgtatcactagcaacaggagttgcagaagggacaata
aggaactcattcaaggatctgtatcctcatctgtccaaaataatacctacttggtatgcc
caggaagaagatcttaagaacctcaacagcccttga
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