Lactuca sativa (garden lettuce): 111885924 Help Entry 111885924         CDS       T05352                                  Name (RefSeq) pre-mRNA-processing factor 19   KO K10599   pre-mRNA-processing factor 19 [EC:2.3.2.27] Organism lsv  Lactuca sativa (garden lettuce) Pathway lsv03040   Spliceosome lsv04120   Ubiquitin mediated proteolysis Brite KEGG Orthology (KO) [BR:lsv00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     111885924   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     111885924  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03041 Spliceosome [BR:lsv03041]     111885924    04121 Ubiquitin system [BR:lsv04121]     111885924    03400 DNA repair and recombination proteins [BR:lsv03400]     111885924 Enzymes [BR:lsv01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      111885924 Spliceosome [BR:lsv03041]  Complex B   Other components    Prp19 complex     111885924  Complex C    Prp19-CDC5 complex     111885924 Ubiquitin system [BR:lsv04121]  Ubiquitin ligases (E3)   U-box type E3    111885924 DNA repair and recombination proteins [BR:lsv03400]  Eukaryotic type   Other factors with a suspected DNA repair function    PSO4 complex     111885924 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  WD40_Prp19 WD40 Beta-prop_EML_2 WD40_WDHD1_1st Prp19 WD40_CDC20-Fz WD40_MABP1-WDR62_2nd WDR55 EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_EML Beta-prop_IFT140_1st WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st Beta-prop_WDR75_1st Beta-prop_Vps41 NBCH_WD40 Beta-prop_HPS5 Beta-prop_WDR19_1st WDR90_beta-prop_4th Beta-prop_TEP1_C Beta-prop_DCAF12 Beta-prop_SCAP Beta-prop_EIPR1 Beta-prop_SPT8 PEP5_VPS11_N WD40_like RMC1_N Beta-prop_DCAF4 U-box KNTC1_N Ge1_WD40 PROPPIN zf-Nse Beta-prop_NWD2_C B-prop_COPA_B_2nd B_lectin Motif Other DBs NCBI-GeneID:  111885924 NCBI-ProteinID:  XP_023737928 LinkDB All DBs Position 1:94788852..94793424 Genome browser AA seq 529 aa AA seqDB search MICSISGEVPEEPVVSKSSGLLFEKRLIERHILDYGKCPVTGETLTTDDLVPIKTGKIVK PRPVQAASIPGMLGMFQNEWDALVLSAFASEQQLHTTRQELSHCLYQHDSACRVIARLKK ELDEARTMLSSLERQAPMPATTAVSSNAYAISNGKRAATEDDEFGPDGKKFRPGISSSII TELTDCNAALSQQRKKRQIPPTLVPLDAIERYTQLNSYPLHKTNKAGILSIDIHQSKDLI ATGGVDMNAVVFNRSSGEIVSTLSGHSKKVTSVKFVSDGELVVTGSADKTVRVWQGSENG NYDCKHVLKDHTAEVQAVTVHATNNYFVTASLDNSWCFYDLSSGLCLAQVEDSSVSEGYT SAAFHPDGLILGTGTSGSIVKIWDVKSQANVARFDGHVGAVTAISFSENGYFLATAAQDG VKLWDLRKLRNFRTFTPYDENTPTQSVEFDHSGSYLAIGGSDIRVYQVANVKSEWNCVKT FPDLSGTGKINSVKFGPDAKYIAVGSMDRNLRLFGLAGEENDAAMEAES NT seq 1590 nt NT seq  +upstreamnt  +downstreamnt atgatttgttcaatttccggcgaggtgccggaagaacctgttgtttctaagtcatccgga ctacttttcgagaagcgattgatcgaaagacacatactggactatggaaaatgtccagtg actggggaaaccctaactacggatgatctcgttccaataaaaactggcaagatagtgaaa cctagaccagtgcaggctgcaagtattcctggaatgcttggaatgtttcagaatgaatgg gatgctttggtgttatctgcttttgcatcagagcaacaattacatacaacaaggcaagag cttagtcattgtttataccagcatgattcagcatgtcgtgtgattgcaagattaaagaaa gaacttgatgaagcaaggacaatgttgtcaagtttagaaagacaagcaccaatgccagca acaacagcagtctcctcaaatgcttatgctataagcaatgggaaaagagctgctactgag gatgatgagtttggtcctgatggtaagaaattccgccctggaatttcttccagtatcata accgaattaacagactgcaatgctgcactttcacagcaaaggaagaaaagacagattcct cccacattggttccattggatgctattgagaggtatacacagctcaacagttaccctctt cacaaaacaaacaaagctggaattttatctattgacatccatcaatcaaaggatcttatt gctactggtggagttgatatgaatgctgtagtctttaatcgatcttcaggggaaattgta tctacactcagtggccactccaagaaggtcacaagtgtcaagtttgtgtctgatggtgag ttggttgttactggttcagctgataaaacagtaagagtgtggcaagggtctgagaatgga aactatgattgtaagcatgtcttaaaggatcatacagctgaggtgcaagctgtgactgta catgctacaaataactattttgtaacagcctctttagacaattcctggtgcttctacgac ctgtcatccggattatgccttgcacaggttgaagattcatctgtatccgagggctacaca tctgcagcttttcatcctgatggtctaattctaggaactggcacttctggatcaattgtt aaaatctgggatgtgaagagtcaggcaaatgttgcaaggtttgatgggcatgttggggca gttactgcaatatcattttcagaaaacggttactttcttgctactgctgctcaagatggt gttaagctgtgggatcttcgtaaactgagaaacttcaggacttttactccctatgatgag aacactccaacacaatctgtggaatttgatcatagtggaagttacttggcaataggaggt tcagacataagggtttatcaagttgcgaatgtgaagtcagaatggaactgtgttaaaaca ttccctgatttgtctggcacaggtaagataaacagtgtaaaatttggccctgatgcaaaa tacatagcggttgggtcaatggatagaaatcttcggttgtttggtttggctggagaagaa aatgatgctgcaatggaagccgaatcttga

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