Lactuca sativa (garden lettuce): 111886018
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Entry
111886018 CDS
T05352
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
111886018
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111886018
03009 Ribosome biogenesis [BR:
lsv03009
]
111886018
04131 Membrane trafficking [BR:
lsv04131
]
111886018
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lsv04147
]
111886018
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
111886018
Ribosome biogenesis [BR:
lsv03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
111886018
Membrane trafficking [BR:
lsv04131
]
SNARE
SNARE associated proteins
Others
111886018
Autophagy
Aggrephagy
Other aggrephagy associated proteins
111886018
Exosome [BR:
lsv04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
111886018
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_33
AAA_2
AAA_5
AAA_22
AAA_14
TIP49
NPHP3_N
RNA_helicase
AAA_17
nSTAND3
Mg_chelatase
AAA_28
AAA_18
Parvo_NS1
ATPase_2
IstB_IS21
ABC_tran
Vps4_C
AAA_7
Viral_helicase1
NB-ARC
AAA_24
TsaE
NACHT
Zeta_toxin
AAA_lid_PRS2_C
DUF815
Zot
Motif
Other DBs
NCBI-GeneID:
111886018
NCBI-ProteinID:
XP_023738027
LinkDB
All DBs
Position
1:79020094..79026308
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AA seq
858 aa
AA seq
DB search
MLRSSNIPWRFIRFTLSVTRILLFSEFLLTDGFLLHIGAPNLQSFDMSNQPESSSSEPKG
PPAAKKDFSTAILERKKSPNRLVVDEAVNDDNSVVAMHPNTMEKLQLFRGDTILIKGKKR
RDTVCIALADETCDEPKIRMNKVIRTNLRVRLGDVVSVHQCPDVKYGKRIHVLPLDDTIE
GVTGDLFDAYLKPYFLEAYRPVRKGDHFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFC
EGEPIKRDDEDRLDEIGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYG
PPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDE
IDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDR
EIDIGVPDEIGRLEVIRIHTKNMKLSDDVDLEKIAKETHGYVGADLAALCTEAALQCIRE
KMDVIDLEDDSIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNCSWDDIGGLENV
KRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGP
ELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSSGDAGGAADRVLNQLL
TEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKAAMRKSP
VSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERKRSENPDSMDEDED
EVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPEAAGAAAAGGS
DPFAAAAGGGGDDDDLYS
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atgctcagatcgagcaatatcccctggcgatttatcagattcaccctttctgttactcgc
attctcctcttctccgagttcctcctcactgacggattccttctccatatcggagcaccc
aatctccagtcattcgatatgagcaatcagccggagtcttcttcatcggagccgaaaggc
ccgcctgcggcgaaaaaagacttttcaaccgctatcttggagcgcaagaagtctccgaac
cggcttgtcgttgacgaagccgtcaatgacgacaactcagtcgtcgctatgcaccctaat
acgatggagaagttgcagcttttccgcggtgataccatactgatcaaggggaagaaaagg
agagatacagtctgcattgcccttgctgatgaaacctgtgatgaaccaaagatcagaatg
aacaaagtcattcgaacaaacctaagggttcgacttggagatgttgtatctgttcaccaa
tgtccagatgtgaaatatgggaaacgtatccatgtccttcctctagatgacaccattgaa
ggtgtcacaggagacttattcgatgcttacctcaaaccctacttcttggaggcatataga
cctgtaagaaagggtgatcattttcttgtgagaggaggcatgcgaagtgtggaattcaaa
gtaattgaaactgatccaggggagtattgtgttgttgctccagacactgaaatattctgt
gagggtgaacctatcaagagagacgatgaagataggctagatgagattggttatgatgat
gttggtggtgtaagaaaacaaatggctcaaattcgtgaacttgttgaattaccattacgc
cacccacagcttttcaaatccattggagtaaaacctccaaagggtattttactatatggc
cctcctggatctggaaagacactcatagcaagagcagtagccaatgaaacaggagctttc
tttttctgcatcaatgggcctgaaatcatgtcaaaactggctggagaaagtgagagcaac
ctcaggaaggcgtttgaagaggctgaaaagaatgccccttcgattattttcattgatgag
attgactcaattgcccctaaaagagagaaaactaatggtgaagttgaaaggaggattgtt
tcacagctgttgacacttatggatggattaaaatcacgtgcacatgttattgtaatggga
gctacaaatcgccctaatagcattgaccctgctttgagaaggtttgggagattcgatagg
gaaattgacattggtgtccctgatgaaattgggcgtcttgaagttattcgtatccacacc
aagaacatgaaactctctgatgatgttgacttggaaaagatagctaaagaaacacacggg
tatgtcggtgctgacctggcagctctctgtactgaagctgcactacaatgcattagagag
aaaatggatgtgattgatttggaagatgattccattgatgctgagattctgaattccatg
gctgtttcaaatgaacatttccagactgctcttggaacaagcaatccctctgctttgcgt
gaaactgttgtggaagttcctaattgcagctgggatgatattggaggtcttgagaatgtt
aagcgtgagcttcaagagactgttcaataccctgtggagcaccctgagaaatttgagaaa
tttgggatgtcaccctcgaaaggagttcttttctatggcccacctggatgtggaaagaca
cttttagccaaggctattgctaatgaatgtcaagctaactttatcagcattaaaggacct
gaattgcttactatgtggtttggtgaaagtgaagccaatgttcgtgagatttttgataag
gctagaggttctgcaccctgtgtccttttctttgatgaacttgattccattgcaactcag
aggggaagtagttccggggatgcaggaggagctgcagatcgtgttctgaaccaactgctg
acagaaatggacggaatgtcagcaaaaaagacggttttcataatcggagccaccaacaga
ccggacataatcgaccctgcactgcttcgtccagggcggctcgatcaactgatttatatc
ccactacctgacgaggattcccgccaccagattttcaaggcggcaatgcgcaaatccccc
gtttccaaagatgtcgatttaagagccctcgccaaatacactcaaggctttagcggtgct
gacatcaccgaaatttgccagcgtgcctgcaagtatgcaatccgagagaacatcgagaaa
gatatagagagggaaagaaagaggagtgagaatccagactccatggatgaggatgaagat
gaggtggcagagattaaggctgcacattttgaggagtctatgaaatatgcgcgtagaagt
gtgagtgatgcggatattagaaagtatcaagcgtttgctcagacattgcaacagtccaga
gggtttggctcggagttccggttccctgaagcggctggagcggcggcagctggtggttct
gacccgtttgcagcggcggctggtggtggtggagatgatgatgacttatacagttag
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