Lactuca sativa (garden lettuce): 111886051
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Entry
111886051 CDS
T05352
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
111886051
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111886051
03009 Ribosome biogenesis [BR:
lsv03009
]
111886051
04131 Membrane trafficking [BR:
lsv04131
]
111886051
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lsv04147
]
111886051
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
111886051
Ribosome biogenesis [BR:
lsv03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
111886051
Membrane trafficking [BR:
lsv04131
]
SNARE
SNARE associated proteins
Others
111886051
Autophagy
Aggrephagy
Other aggrephagy associated proteins
111886051
Exosome [BR:
lsv04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
111886051
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_33
AAA_2
AAA_5
AAA_22
AAA_14
TIP49
NPHP3_N
RNA_helicase
AAA_17
nSTAND3
Mg_chelatase
AAA_28
AAA_18
Parvo_NS1
ATPase_2
IstB_IS21
ABC_tran
Vps4_C
AAA_7
Viral_helicase1
NB-ARC
AAA_24
TsaE
NACHT
Zeta_toxin
AAA_lid_PRS2_C
DUF815
Zot
Motif
Other DBs
NCBI-GeneID:
111886051
NCBI-ProteinID:
XP_023738060
LinkDB
All DBs
Position
1:79002041..79006771
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AA seq
858 aa
AA seq
DB search
MLRSSDISWRFIRFTLSVARILPFPEFLLTDGFLLHIGAPNLQSFDMSNQPESSSSEPKG
PPAAKKDFSTAILERKKSPNRLVVDEAVNDDNSVVAMHPNTMEKLQLFRGDTILIKGKKR
RDTVCIALADETCDEPKIRMNKVIRTNLRVRLGDVVSVHQCPDVKYGKRIHVLPLDDTIE
GVTGDLFDAYLKPYFLEAYRPVRKGDHFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFC
EGEPIKRDDEDRLDEIGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYG
PPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDE
IDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDR
EIDIGVPDEIGRLEVIRIHTKNMKLSDDVDLEKIAKETHGYVGADLAALCTEAALQCIRE
KMDVIDLEDDSIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNCSWDDIGGLENV
KRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGP
ELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSSGDAGGAADRVLNQLL
TEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKAAMRKSP
VSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERKRSENPDSMDEDED
EVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPEAAGAAAAGGS
DPFAAAAGGGGDDDDLYS
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atgctcagatcgagcgatatctcctggcgatttatcagattcaccctttccgttgctcgc
attctccccttccccgagttcctcctcactgacggattccttctccatatcggagcaccc
aatctccagtcattcgatatgagcaatcagccggagtcttcttcatcggagccgaaaggc
ccgcctgcggcgaaaaaagacttttcaaccgctatcttggagcgcaagaagtctccgaac
cggcttgtcgttgacgaagccgtcaatgacgacaactcagtcgtcgctatgcaccctaat
acgatggagaagttgcagcttttccgcggtgataccatactgatcaaggggaagaaaagg
agagatacagtctgcattgcccttgcagatgaaacctgtgatgaaccaaagatcagaatg
aacaaagtcattcgaacaaacctaagggttcgacttggagatgttgtatctgttcaccaa
tgtccagatgtgaaatatgggaaacgtatccatgtccttcctctagatgacaccattgaa
ggtgtcacaggagacttattcgatgcttacctcaaaccctacttcttggaggcatataga
cctgtaagaaagggtgatcattttcttgtgagaggaggcatgcgaagtgtggaattcaaa
gtaattgaaactgatccaggggagtattgtgttgttgctccagacactgaaatattctgt
gagggtgaacctattaagagagacgatgaagataggctagacgagattggttatgatgat
gtaggtggtgtaagaaaacaaatggctcaaattcgtgaacttgttgaattaccattacgc
cacccacagcttttcaaatccattggagtaaaacctccgaagggtattttactatatggc
cctccaggatctggaaagacactcatagcaagagcagtagccaatgaaacaggagctttc
tttttctgcatcaatgggccagaaatcatgtcaaagctggctggagaaagtgagagcaat
ctcagaaaggcttttgaagaggctgaaaagaatgccccttcgattattttcattgatgag
attgactcaattgcccctaaaagagagaagactaatggtgaagtcgaaaggaggattgtt
tcacagctgttgacacttatggatgggttaaagtcacgtgcacatgttattgtaatggga
gctacaaatcgccctaatagcattgaccctgctttaagaaggtttgggagattcgatagg
gaaattgacattggtgtccctgatgaaattgggcgtcttgaggttattcgtatccacact
aagaacatgaaactctctgatgatgttgatttggaaaagatagctaaagaaacacatggg
tatgtcggtgctgacctggcagctctctgtactgaagctgcactacaatgcattagagag
aaaatggatgtgattgatttggaagatgattccattgatgctgagattctgaattccatg
gctgtttcaaatgaacatttccagactgctcttggaacaagcaatccctctgctttgcgt
gaaactgttgtggaagttcctaattgcagctgggatgatattggaggtcttgagaatgtt
aagcgtgagcttcaagagactgttcaataccctgtggagcaccctgagaaatttgagaaa
tttggaatgtcaccctcgaaaggagttcttttctatggcccacctggatgtggaaaaaca
cttttagccaaggctattgcaaatgaatgtcaagctaactttataagcattaaaggacct
gaattgcttactatgtggtttggtgaaagtgaagccaatgttcgtgagatttttgataag
gctagaggttctgcaccctgtgtcctcttctttgatgaacttgattccattgctactcag
aggggaagtagttccggggacgcaggaggagctgcagatcgtgttctgaaccaactgctg
acagaaatggacggaatgtcagcgaaaaagacggttttcataatcggagccaccaacaga
ccggacataatcgaccctgcactgcttcgtccagggcggctcgatcaactgatttatatc
ccactacctgacgaggattcccgccaccagattttcaaggccgcaatgcgcaaatcccct
gtttccaaagatgtcgatttaagagccctcgccaaatacactcaaggctttagcggtgct
gacatcaccgaaatatgtcagcgtgcctgcaagtacgcaatccgagagaacatcgagaaa
gatatagagagggaaagaaagaggagtgagaatccagactccatggatgaggatgaagat
gaggtggcagagattaaggctgcacattttgaggagtctatgaaatatgcgcgtagaagt
gtgagtgatgcggatattagaaagtatcaagcgtttgctcagacattgcaacagtccaga
gggtttgggtcggagttccgattccctgaagcggctggagcggcggcagctggtggttct
gacccgtttgcggcggcggctggtggtggtggagatgatgatgacttatacagttag
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