KEGG   Lactuca sativa (garden lettuce): 111886051
Entry
111886051         CDS       T05352                                 
Name
(RefSeq) cell division cycle protein 48 homolog
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    111886051
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lsv03019]
    111886051
   03009 Ribosome biogenesis [BR:lsv03009]
    111886051
   04131 Membrane trafficking [BR:lsv04131]
    111886051
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:lsv04147]
    111886051
Messenger RNA biogenesis [BR:lsv03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     111886051
Ribosome biogenesis [BR:lsv03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    111886051
Membrane trafficking [BR:lsv04131]
 SNARE
  SNARE associated proteins
   Others
    111886051
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    111886051
Exosome [BR:lsv04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   111886051
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N RuvB_N AAA_16 CDC48_2 AAA_33 AAA_2 AAA_5 AAA_22 AAA_14 TIP49 NPHP3_N RNA_helicase AAA_17 nSTAND3 Mg_chelatase AAA_28 AAA_18 Parvo_NS1 ATPase_2 IstB_IS21 ABC_tran Vps4_C AAA_7 Viral_helicase1 NB-ARC AAA_24 TsaE NACHT Zeta_toxin AAA_lid_PRS2_C DUF815 Zot
Other DBs
NCBI-GeneID: 111886051
NCBI-ProteinID: XP_023738060
LinkDB
Position
1:79002041..79006771
AA seq 858 aa
MLRSSDISWRFIRFTLSVARILPFPEFLLTDGFLLHIGAPNLQSFDMSNQPESSSSEPKG
PPAAKKDFSTAILERKKSPNRLVVDEAVNDDNSVVAMHPNTMEKLQLFRGDTILIKGKKR
RDTVCIALADETCDEPKIRMNKVIRTNLRVRLGDVVSVHQCPDVKYGKRIHVLPLDDTIE
GVTGDLFDAYLKPYFLEAYRPVRKGDHFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFC
EGEPIKRDDEDRLDEIGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYG
PPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDE
IDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDR
EIDIGVPDEIGRLEVIRIHTKNMKLSDDVDLEKIAKETHGYVGADLAALCTEAALQCIRE
KMDVIDLEDDSIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNCSWDDIGGLENV
KRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGP
ELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSSGDAGGAADRVLNQLL
TEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKAAMRKSP
VSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERKRSENPDSMDEDED
EVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPEAAGAAAAGGS
DPFAAAAGGGGDDDDLYS
NT seq 2577 nt   +upstreamnt  +downstreamnt
atgctcagatcgagcgatatctcctggcgatttatcagattcaccctttccgttgctcgc
attctccccttccccgagttcctcctcactgacggattccttctccatatcggagcaccc
aatctccagtcattcgatatgagcaatcagccggagtcttcttcatcggagccgaaaggc
ccgcctgcggcgaaaaaagacttttcaaccgctatcttggagcgcaagaagtctccgaac
cggcttgtcgttgacgaagccgtcaatgacgacaactcagtcgtcgctatgcaccctaat
acgatggagaagttgcagcttttccgcggtgataccatactgatcaaggggaagaaaagg
agagatacagtctgcattgcccttgcagatgaaacctgtgatgaaccaaagatcagaatg
aacaaagtcattcgaacaaacctaagggttcgacttggagatgttgtatctgttcaccaa
tgtccagatgtgaaatatgggaaacgtatccatgtccttcctctagatgacaccattgaa
ggtgtcacaggagacttattcgatgcttacctcaaaccctacttcttggaggcatataga
cctgtaagaaagggtgatcattttcttgtgagaggaggcatgcgaagtgtggaattcaaa
gtaattgaaactgatccaggggagtattgtgttgttgctccagacactgaaatattctgt
gagggtgaacctattaagagagacgatgaagataggctagacgagattggttatgatgat
gtaggtggtgtaagaaaacaaatggctcaaattcgtgaacttgttgaattaccattacgc
cacccacagcttttcaaatccattggagtaaaacctccgaagggtattttactatatggc
cctccaggatctggaaagacactcatagcaagagcagtagccaatgaaacaggagctttc
tttttctgcatcaatgggccagaaatcatgtcaaagctggctggagaaagtgagagcaat
ctcagaaaggcttttgaagaggctgaaaagaatgccccttcgattattttcattgatgag
attgactcaattgcccctaaaagagagaagactaatggtgaagtcgaaaggaggattgtt
tcacagctgttgacacttatggatgggttaaagtcacgtgcacatgttattgtaatggga
gctacaaatcgccctaatagcattgaccctgctttaagaaggtttgggagattcgatagg
gaaattgacattggtgtccctgatgaaattgggcgtcttgaggttattcgtatccacact
aagaacatgaaactctctgatgatgttgatttggaaaagatagctaaagaaacacatggg
tatgtcggtgctgacctggcagctctctgtactgaagctgcactacaatgcattagagag
aaaatggatgtgattgatttggaagatgattccattgatgctgagattctgaattccatg
gctgtttcaaatgaacatttccagactgctcttggaacaagcaatccctctgctttgcgt
gaaactgttgtggaagttcctaattgcagctgggatgatattggaggtcttgagaatgtt
aagcgtgagcttcaagagactgttcaataccctgtggagcaccctgagaaatttgagaaa
tttggaatgtcaccctcgaaaggagttcttttctatggcccacctggatgtggaaaaaca
cttttagccaaggctattgcaaatgaatgtcaagctaactttataagcattaaaggacct
gaattgcttactatgtggtttggtgaaagtgaagccaatgttcgtgagatttttgataag
gctagaggttctgcaccctgtgtcctcttctttgatgaacttgattccattgctactcag
aggggaagtagttccggggacgcaggaggagctgcagatcgtgttctgaaccaactgctg
acagaaatggacggaatgtcagcgaaaaagacggttttcataatcggagccaccaacaga
ccggacataatcgaccctgcactgcttcgtccagggcggctcgatcaactgatttatatc
ccactacctgacgaggattcccgccaccagattttcaaggccgcaatgcgcaaatcccct
gtttccaaagatgtcgatttaagagccctcgccaaatacactcaaggctttagcggtgct
gacatcaccgaaatatgtcagcgtgcctgcaagtacgcaatccgagagaacatcgagaaa
gatatagagagggaaagaaagaggagtgagaatccagactccatggatgaggatgaagat
gaggtggcagagattaaggctgcacattttgaggagtctatgaaatatgcgcgtagaagt
gtgagtgatgcggatattagaaagtatcaagcgtttgctcagacattgcaacagtccaga
gggtttgggtcggagttccgattccctgaagcggctggagcggcggcagctggtggttct
gacccgtttgcggcggcggctggtggtggtggagatgatgatgacttatacagttag

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