Lactuca sativa (garden lettuce): 111886405
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Entry
111886405 CDS
T05352
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1
KO
K14485
transport inhibitor response 1
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
111886405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lsv04121
]
111886405
Ubiquitin system [BR:
lsv04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
111886405
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Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
LRR_4
F-box-like
F-box
LRR_NXF1-5
Motif
Other DBs
NCBI-GeneID:
111886405
NCBI-ProteinID:
XP_023738412
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Position
9:complement(6356410..6360262)
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AA seq
583 aa
AA seq
DB search
MAYSFPEEVLEHVFSFLSSEKDRNAVSLVCKSWYEMERWCRRRIFVGNCYAVNPKIMIRR
FPEVKSVELKGKPHFADFNLVPEGWGGYAHPWIVEIARGYPWLEEIRLKRMVVTDESLEL
ISKSFKNFKVLVLSSCEGFSTDGLAAIAANCRNLRVLELRECEVEDVSGHWLSHFPDSFT
SLESLNMGCLGCEVSFSALERLVARSPNLKTLRLNRTVPLEKLSTLLQLAPQLVEFGTGS
YSADIRSDLYSSLVEAFSRCKNLKGLSGFWDVVPAYLPAFYSVCPGLTFLNLSYAATQSP
DLTKIVSQCHNLQRLWVLDYIEDTGLNALAISCKDLQELRVFPSDPFVADANVMLTEEGL
VSVSEGCPKLQSVLYFCRQFSNAALTSIAKNRPNLTTFRLCILEPRAPDYLTFEPLDSGF
GSIVQHCKNLRRLSLSGLLTDRVFEHIGTHAKKLDMLSIAFAGDSDLGLHHVLSGCESLR
KLEIRDCPFGDKALLANASKLETMRSLWMSSCGVSFGACKVLGQKMPGLNVEVIDERENL
DSIPQNSPVEKLYIYRTVAGERFDMPDFVRTMGKHNHNRRRFK
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atggcgtactcgtttcctgaggaggtgttggagcacgtgttttcatttttgagctcggaa
aaggacaggaacgcggtttcgttggtgtgcaagtcgtggtatgaaatggagaggtggtgc
cggaggaggatttttgtggggaactgttacgcggtaaaccctaaaatcatgatcaggagg
tttccagaggtgaaatcggttgagttgaaagggaaaccgcattttgccgacttcaatttg
gttccggagggatggggagggtatgctcacccttggatcgttgaaattgctaggggttac
ccttggttagaggagatcaggcttaaacgcatggtggttacggatgagagcttggagtta
atatctaaatcgtttaagaacttcaaggttttggttttgtcgtcatgtgagggcttcagt
actgacggtcttgctgccattgctgctaattgcagaaatttgagagtattggagttgcgg
gagtgtgaagttgaagatgtaagtgggcattggctgagtcacttccctgattcttttacc
tcattggagtctctaaacatgggttgtttgggttgtgaggtgagtttctcagccctggaa
cgcctggttgccaggtcacccaacctcaagacccttcgactcaaccgcactgtacccctt
gagaagctctcgacactcctacagctggccccacagctggttgaatttggcacaggctcc
tactcagcagacatccggtcagatctatattcaagtctggtggaagccttttcacgctgc
aagaatctaaaagggctttcagggttttgggatgtggttccagcttatcttcctgctttt
tactctgtgtgtcctggcctcacttttctaaacttgagctacgccgccacacagagtcct
gatcttaccaagattgttagccaatgtcataacctgcagcgcctatgggtgttggattac
atcgaggacacggggctcaacgcccttgcaatttcatgtaaggaccttcaagaattgcga
gtgttcccttcggacccttttgtggcggatgcaaacgtgatgttaacagaagaaggtctg
gtttcagtctctgaaggttgcccaaagcttcagtctgtcctctacttctgtcgccagttt
tcaaatgcagcattaaccagcattgccaaaaaccgccctaacctaacaaccttccgtttg
tgcattctggaaccccgagctcccgattacctgacattcgaacccctggattccggtttc
ggatccatagtccaacactgcaaaaacctgagacgcctttcgttgtcgggtctcctgaca
gaccgtgtgtttgaacacatcgggacccacgctaaaaaactggacatgctttcgatagct
tttgctggggatagtgatttggggttgcatcatgttttatctggatgtgagagtttgagg
aagctggaaatacgggattgtccttttggggataaggctcttttggctaatgcttccaag
ttggagacaatgcgatccctttggatgtcttcttgtggggttagttttggagcgtgtaag
gtgttgggtcagaagatgcctggtcttaatgttgaagtcattgatgaaagagagaatctt
gattccatccctcaaaactctcccgttgagaagctttacatttaccgaaccgttgcaggg
gagaggtttgacatgcccgattttgtacggacaatgggtaaacacaaccacaataggagg
aggttcaaataa
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