Lactuca sativa (garden lettuce): 111886431
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Entry
111886431 CDS
T05352
Name
(RefSeq) exosome complex component RRP4 homolog isoform X1
KO
K03679
exosome complex component RRP4
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111886431
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111886431
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
111886431
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
111886431
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GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
111886431
NCBI-ProteinID:
XP_023738446
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Position
9:complement(7048657..7051814)
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AA seq
332 aa
AA seq
DB search
MRQIRKRARRRPEALLSFSHRYSYSSRTTLVRVLNCRRRRHSDRPRPPASAYDFLFLLRG
HGTTELEGEVVATVCGVIERVNKLVYVRTLRARYKPEVGDIIVGRVLEVAPKRWRLEINF
SQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRDFMRDGSLQLQARSQK
YGKLERGQMLTVSPYLVKRRKQHFHHLQQYGIDLILGCNGFIWVGEHVETKDNMVEDELI
KPPNKSQTTLEEQEQAYTPLETRQNICRIANAIRVLSTLGFSITLDVIQEVVDMSSSKGL
NIHEMLAAEFSVLVAEREAERRSSSTSTRRKR
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atgcgtcaaataagaaaaagagcaagacgacgacctgaggccttactctcgttctctcac
agatactcatactcctctcgcacaactctcgttcgcgttctcaactgcagacgacgaaga
cacagcgaccggccgcgacctcctgcttcagcctacgactttctcttcctgcttcggggt
catgggacgacagagcttgagggtgaggtcgtggcaaccgtgtgtggagtaattgaacgt
gtaaataaattggtctatgttcgcactttgagagccaggtataagcctgaggttggtgat
atcatagtaggccgtgttcttgaggttgctccaaagcggtggagattggagattaatttt
agccaagatgcggtattgatgctttcttcaatgaatttgcctgatggaatccagaggcga
cggactgcagttgatgagctcaacatgcgtagcatttttgaagagaatgatgtcatttgt
gctgaagtccgtgatttcatgcgtgatggtagtctacaactgcaagcaaggagccagaaa
tatggaaagctagaaaggggtcagatgctgacagtgtctccatatctagtaaagaggcgc
aaacagcatttccatcatctacaacagtatggaatcgacctcatacttggttgtaatggc
ttcatctgggttggtgaacatgttgaaactaaagataacatggtggaagacgaactgatt
aaacccccaaacaaatcccaaacaacccttgaagaacaagaacaagcatacactccgtta
gaaaccaggcaaaacatatgtaggattgcaaatgctatcagggtgttgtctacattgggt
tttagcattacacttgatgtgattcaggaggttgttgatatgagcagctccaagggtctg
aatatacacgagatgctcgctgctgagttttctgttttggttgctgaaagagaagctgag
cgaagaagctcctcaacctcaactcgaagaaaacgatag
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