Lactuca sativa (garden lettuce): 111887016
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Entry
111887016 CDS
T05352
Symbol
LOC111887016
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111887016 (LOC111887016)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsv03041
]
111887016 (LOC111887016)
03009 Ribosome biogenesis [BR:
lsv03009
]
111887016 (LOC111887016)
Enzymes [BR:
lsv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111887016 (LOC111887016)
Spliceosome [BR:
lsv03041
]
Complex A
U2 snRNP components
U2 related factors
111887016 (LOC111887016)
Complex B
111887016 (LOC111887016)
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
111887016 (LOC111887016)
Ribosome biogenesis [BR:
lsv03009
]
Eukaryotic type
90S particles
Helicases
111887016 (LOC111887016)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
WHD_HA2
nSTAND3
AAA_19
AAA_22
UvrD-helicase
AAA_11
NPHP3_N
DEAD
NB-ARC
SLFN-g3_helicase
ATPase
AAA_SelU
AAA_30
Zeta_toxin
ABC_tran
Helicase_C
SRP54
NACHT
Motif
Other DBs
NCBI-GeneID:
111887016
NCBI-ProteinID:
XP_052620334
LinkDB
All DBs
Position
1:complement(158868924..158874730)
Genome browser
AA seq
727 aa
AA seq
DB search
MDPKRKSKVSLFAVVDEATFTTKLNIDDGGTTAHGVYISNMSVVNRWNGRPYSQRYYDML
EKRTSLPVWRQKREFLKAFEDNQVLIIAGEPGSGKTTQISQFVLETIDVESAYKHKRFMV
GCTQPHRLAAMSVSRRVAEEMDVTIGEEVGYSVRLEDSISDKTVLKYLTDGILLREAIND
PLLWRYKVIILDEANERSLATDVLLGVLKGVLKKRPDLKLVVISETHKAKKFQSYFFGAP
LIKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGGILVFLAGEQEIEDACHKI
TELVSEMGDQLGPVKVVPLFSTLTPLMLNKIYEPPPSPLTKDGLAGRKIVVSTNIAETSF
SIDDIVYVIDPGFAKQKVYNPRVHVDFSFVSPISKASAHLRSGCVGRTQRGKCFRLYTEK
SFKNDLQPKTYPEILRSNIAHTVLTLKKLGIDDLIHFDFMDPPAPEALMRALEVLNYLGA
LDDNGNLTKLGEILSEFPLDPHIGKMLVASSKFNCSNEILSISAMLSVPNCFVQPRKAQK
ASVEAKARFRHIDGDHLTLLNVYHAYKRNNEDESWCSENFVNYRALKFADNVRHQLACIM
IRLNLKLCSTDFNNRDYYTNIRKALLAGYFMQVAHLESKGHYLTMKDNLVVHLHPSNCLD
HKPEWVIYNECVLTSKLFIQTVTDVRGQWLVEIAPHYYDLDNFPQCEAKQLLKKIYKKKE
ETRNKTR
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atggatccgaagaggaagtcgaaggtaagcctgttcgctgtggtggatgaagccacattc
accaccaagcttaacatagacgacggcggaaccaccgctcacggcgtctatattagtaac
atgtcggtggtcaaccggtggaatggacgcccatactcacagcgttattacgacatgttg
gagaagaggacgagtttaccagtctggcgtcagaaaagggaatttttgaaagcattcgag
gataatcaagttcttatcatagccggtgaacctggcagcggtaaaaccacacagatttct
caatttgttctggaaaccattgatgtagaaagtgcttataaacacaagagattcatggtt
ggatgcactcagcctcataggctggctgcaatgtctgtttctcgtcgggttgcagaagag
atggatgtaaccattggagaagaagtaggttacagtgttcgtcttgaggactcgatcagt
gataaaactgttttgaagtatttgactgatggtatacttttgagagaagccattaatgat
ccacttctatggaggtacaaagtgataattcttgatgaggccaatgaaagatcattagct
acagatgtgttgcttggggttctaaagggagtgttgaagaaaagacccgatcttaagctg
gttgtaatcagtgaaactcacaaggctaaaaagtttcagagttatttctttggtgcacct
ttgatcaaagttcctggtagacttcatcctgttgaaattttctacacccaagaacctgaa
agggactaccttgaagcagcaatccgaacagtggtgcaaatacatatgtgtgaacctcca
ggtggcatacttgtcttcctcgctggcgagcaagagatagaagatgcatgtcacaagata
acagaattagtttccgaaatgggagatcaattagggccagtgaaggttgtacctctgttt
tctacactcactccattgatgctgaacaagatatatgaacctcctccatctccattaact
aaggatggtcttgctggaagaaagattgtagtttcaacaaacattgcagaaacttcgttc
tccatagatgacatagtctatgtcatagaccctggatttgcaaagcaaaaagtctacaat
ccacgagtgcatgttgacttttcctttgtttccccaatatccaaagcaagtgctcacctg
agatcaggttgtgttggaagaacacaacggggtaaatgtttcagactctacacagagaaa
agtttcaaaaatgatcttcaacctaaaacctacccagagatccttcgatcaaacattgca
catacagttcttactcttaagaaacttggtatagatgatctgatccattttgattttatg
gatcctcctgctccagaagcattgatgcgggcattggaggttttgaattacttgggagca
ttagatgacaatggaaacctgaccaaattgggtgaaatcctgagtgaatttccccttgat
ccacatataggaaaaatgcttgtggcaagctctaagttcaactgttcaaatgaaattctt
tctatatcagcaatgctctcagttcccaattgctttgtccagcctaggaaggctcagaaa
gcttctgtagaagcaaaagcgcgattcagacacattgatggggaccaccttacacttttg
aatgtttatcatgcttacaagcgaaataatgaggatgaatcatggtgttctgagaacttt
gtcaattatagggctctcaagtttgcagataatgtcaggcatcagctagcttgtataatg
attaggctcaacctcaagttatgcagcaccgattttaacaatcgtgactactataccaac
ataagaaaggctttgttagcaggatactttatgcaagttgcccatttggaaagcaaagga
cattatttgactatgaaagataatcttgtagttcatttgcatccatcaaattgtttagac
cacaagccagagtgggttatttacaacgagtgtgtcttaacaagcaagctattcatccaa
acagttactgatgttcgtgggcaatggttggttgagattgcacctcactactatgatctt
gacaacttcccacaatgtgaagcaaaacaacttcttaagaagatatacaagaaaaaggaa
gagactagaaacaagacaaggtag
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integrated database retrieval system
