KEGG   Lactuca sativa (garden lettuce): 111887390
Entry
111887390         CDS       T05352                                 
Name
(RefSeq) DNA-directed RNA polymerases II and IV subunit 5A
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv03020  RNA polymerase
lsv03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    111887390
  09124 Replication and repair
   03420 Nucleotide excision repair
    111887390
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lsv03021]
    111887390
   03400 DNA repair and recombination proteins [BR:lsv03400]
    111887390
Transcription machinery [BR:lsv03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     111887390
  RNA polymerase III system
   RNA polymerase III
     111887390
  RNA polymerase I system
   RNA polymerase I
     111887390
DNA repair and recombination proteins [BR:lsv03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      111887390
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N
Other DBs
NCBI-GeneID: 111887390
NCBI-ProteinID: XP_023739328
LinkDB
Position
4:11928494..11929589
AA seq 206 aa
MTLSEEEMKRLCRIRRTVMQMLRDRGYLVGEFEINIGLNEFVRKFGENMKREDLIISKAN
ANDSSDQIYVFFPDEPKVGVKTLKTYIERMKSENVIRAILVVVENLTPIARNCMSEIATK
FQLEVFQEAELLVNVKDHILVPEHQVLTNEEKKTLLARYTVKETQLPRIQVSDPIARYYG
LKRGQVMKIIRPSETAGRYVTYRYVV
NT seq 621 nt   +upstreamnt  +downstreamnt
atgacgctatcggaagaagaaatgaagcgtttgtgtcggatccgcagaactgttatgcaa
atgctgagagacagaggttatctggttggagaattcgagatcaatattggattaaacgaa
ttcgtcaggaaattcggtgaaaacatgaaaagagaagatctcataatcagtaaagccaat
gccaatgattcctccgatcagatctatgtcttcttccccgatgaaccaaaggttggtgtt
aagaccttgaagacctacattgaacgcatgaaatcagaaaacgtaatccgagcaatatta
gtcgtggttgaaaatcttacaccaattgccagaaactgcatgagtgagatcgctacaaag
tttcaattggaagttttccaggaagcagagttgttggtgaatgttaaagatcatatttta
gttcctgagcaccaggtgcttacaaatgaagaaaagaagactttgttagcaagatacact
gtcaaagaaacacagctgccacgaattcaagtgtcggatccaatagcacggtattacggg
ttaaaacgtggtcaagttatgaaaattattaggccaagtgagacggctggacgttatgtc
acctaccgttatgttgtttga

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