Lactuca sativa (garden lettuce): 111887453
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Entry
111887453 CDS
T05352
Name
(RefSeq) ribosome biogenesis protein bms1
KO
K14569
ribosome biogenesis protein BMS1
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
111887453
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lsv03009
]
111887453
Ribosome biogenesis [BR:
lsv03009
]
Eukaryotic type
90S particles
GTPase
111887453
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RIBIOP_C
AARP2CN
GTP_EFTU
Tsr1_G-like
AAA_16
AAA_22
AAA
ATPase_2
MMR_HSR1
RNA_helicase
AAA_14
Motif
Other DBs
NCBI-GeneID:
111887453
NCBI-ProteinID:
XP_023739396
LinkDB
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Position
6:complement(46312612..46317775)
Genome browser
AA seq
1171 aa
AA seq
DB search
MERSQKSHRSRQSGPSAKKKSDTDKKKRGLTDDKKRDPSTDKKKRDLTDDKKRNPKAFAF
NSTVKAKRLQSRASEKEQRRLHIPTIDRNTGEPAPYVIVVHGPPQVGKSLLIKSLIKHYT
KHNIPDVRGPITIVSGKQRRLQFVECPNDINGMIDAAKFADLALLLIDGSYGFEMETFEF
LNIMQVHGFPKVMGVLTHLDKFKDVKKLKKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKY
VKREVHNLARFISVMKFHPLSWRTNHPYILVDRFEDVTPPDKVSTNKKCDRNVTLYGYLR
GCNMKKGTKVHIAGVGDYNVAGVTGLPDPCPLPSAAKKKGLRDKEKLFYAPMSGLGDLLY
DKDAVYININDHFVQFSKKDDEDDGSGARDVGADLVKSLQNTKYSVDEKLNNSFINLFSQ
KSGKITNGDENNSIEPMEEANTVGSDEESEDEEDVDDSDEDNNPHEKSTDSQKVKDNIQE
EVEIHEGRRRRKAVFGNESELDDQEATDEDDDEEEDNDSDDDQNSSEEEEEEEEEDLEEN
AGNASKWKESLIERTISRKSINLMQLVYGKSETKPDASSHEEIDANGSDDDEFFKPKGEG
NKKSSEGVEGNMVNTEDSSKFTNFANVKDWKDGETIESIRDRFVTGDWSKAARRVEGADV
DGENDDDAPVFGEFEDLETGEKNEGDKTEPDSVAEERRLKKLALRAKFDAQYNESDSSDE
DDDDNNKKIKSNNNKANEVSYIDKLKEEAELQRQRNIAELEDLDEATRLEIEGHRTGTYL
RLEIHNVPYEMIDHFDPCHPLLIGGIGLTEENVGYMQARFKRHRWHKKVLKTKDPIIVSI
GWRRYQTLPIYAIEDINGRHRMLKYTPEHMHCLAMFWGPLAPPNTGIVAVQNLSNSQASF
RITATAVVLEFNHSAKIVKKLKLVGEPCKIYKKTALIKKMFTSDLEVARFEGASIRTVSG
IRGQVKKVGKIELGNKPKKMGGKVEEGIARCTFEDKILMSDIVFLRAWTQVDVPCFYNPL
TTALQPRGDTWRGVRTVAELRREYNVPIPDNKDSHYKRIERPLKKFNPVVVPKSLQSSLP
FRSKPKDVKTKKDGRAVVPEPHERDVHKLVQHLQLIRHNKMKQQKVKKMEKKKKYDVEKA
KEEVVTKKRQREERRERFRSQDKLQKKMRRD
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atggagcgatctcagaagtctcacaggtctcgtcaatctggcccctcagccaagaaaaaa
tccgatactgataagaagaaacgcggcctcaccgatgataagaagcgagaccctagtact
gataagaagaaacgcgacctcactgatgataagaagcgaaaccctaaggctttcgcattc
aattcaactgtgaaagctaagcgtctacaatcccgtgcttcagagaaagagcagcgtcgc
ctccacattccaactattgatcgcaatacaggggaacctgctccttatgttatcgttgtc
catggccctcctcaggttggaaagtctctacttataaaatctcttatcaagcactacacc
aagcataacataccagatgtgcgaggtccaatcactattgtatcaggtaaacaaagaagg
ctacaatttgtggagtgcccaaatgatatcaatggtatgatcgatgctgctaaatttgct
gatcttgcacttttgcttattgatggaagctatggttttgaaatggaaacatttgagttt
cttaacatcatgcaagttcatggattcccaaaagttatgggtgttcttacacatcttgat
aagttcaaagatgtcaagaaactcaaaaagacaaagcaaagactcaaacatcgtttctgg
acagaaatttatgatggggcaaaattattctacttatctggtcttattcatggaaagtat
gtgaagcgtgaagttcataatcttgcaagattcatttctgttatgaaatttcatcctctt
tcatggagaaccaatcatccttacattctagtagaccgttttgaagatgttacacctcca
gataaagtgtcgaccaataaaaaatgtgatagaaatgtgacattatatggttatttacgt
ggttgcaatatgaaaaaaggaactaaagtgcatattgctggtgtaggagattataatgta
gcaggtgtaacaggtttacctgatccttgccctttaccttcagctgcaaaaaagaaaggg
ttacgtgataaagagaagcttttttatgcacctatgtctggattaggggatcttttatac
gataaagatgctgtttatataaacattaatgatcactttgttcagttttctaaaaaagat
gatgaagatgatggttcaggagctagagatgtaggcgcagatcttgtgaaatcactacaa
aacacgaaatattctgttgatgagaagttaaataatagttttatcaatctttttagtcaa
aaaagtggaaaaattacaaatggtgatgaaaataactccattgaacctatggaggaagct
aatactgttggttctgatgaggaaagtgaagatgaagaagatgttgatgactctgatgaa
gataacaaccctcatgaaaagtcaactgatagtcaaaaagtcaaagataacattcaggaa
gaagttgagattcatgagggaagaagaaggagaaaagcagtttttggaaacgaaagcgag
cttgatgatcaagaggctactgatgaagatgatgatgaagaagaagataatgattcagat
gatgatcaaaattcttctgaggaagaagaagaggaagaggaagaagatctagaagagaat
gcagggaatgcttcaaaatggaaagaatcattaattgaaaggacaatatcaagaaaaagc
attaatcttatgcaacttgtgtatgggaagtctgaaacaaaaccagatgcttcttcccat
gaagaaattgatgcaaatggaagcgatgatgatgagtttttcaagcccaaaggtgaagga
aacaagaaatcaagcgaaggagtggagggcaatatggtaaatacagaagatagttccaaa
ttcacaaactttgctaatgtaaaagactggaaagatggagaaacaattgaaagcattcgt
gatcgttttgtaaccggagactggtcaaaggctgctcgtcgagtggaaggtgctgacgtg
gacggtgaaaatgacgatgatgcccctgtgtttggtgagtttgaagacttggaaacaggt
gagaagaatgaaggtgataaaacagagcctgactcagttgctgaagaacgaaggctcaaa
aaacttgctcttcgtgcaaaattcgatgctcaatacaatgaatccgattcatctgatgaa
gatgatgatgacaacaataaaaaaatcaagagtaataacaacaaagctaatgaagttagt
tatatcgacaagttgaaagaggaagctgagcttcagagacaaagaaatatagctgaactt
gaagacctagacgaggccacacggttagaaatagagggtcaccgcactggaacctacctc
agattagaaattcataatgtcccatatgaaatgattgaccattttgacccttgtcatcct
cttctcattggtggaatcggcctcacagaagaaaacgttggatacatgcaggcaagattt
aagcgacacagatggcataaaaaagtattaaaaacaaaagatccaataatcgtttcaatc
ggatggaggcgttaccaaacactcccaatatacgccattgaagacataaacgggcgccac
cgtatgctaaaatacacccccgaacacatgcactgcctcgccatgttctggggcccactc
gcccctcccaacaccgggatcgtagccgtccaaaatctctcaaatagtcaggcatcattc
agaatcacagctactgcggttgtcctagagttcaaccattccgcaaaaatcgttaaaaaa
ctaaaactagttggcgaaccgtgtaaaatttacaaaaaaaccgcacttattaaaaaaatg
ttcacttctgaccttgaagtggcaagattcgaaggcgcgtcgattcgaactgttagtggg
attcgtggacaagtgaaaaaggtgggaaagattgagttgggtaataagcctaaaaagatg
gggggaaaagttgaagaaggaatagcgaggtgtacttttgaagataagattttaatgagt
gatattgtatttttgcgcgcgtggactcaagttgatgtcccgtgtttttataacccgttg
acaaccgccttgcaaccacgtggcgacacctggcgcggtgtgagaacagtagcggaattg
agaagagaatataatgttccaattcctgacaacaaagattctcactacaagaggatagaa
agaccgttgaagaagttcaacccggttgtggtcccgaaatcattgcaaagttcgttgcca
ttccggtcaaagccgaaggatgtgaagacaaagaaggatgggagggcggttgttccagaa
ccacatgagagagatgttcataaactcgtgcagcatttgcagttgattaggcataataag
atgaagcagcagaaagtgaagaaaatggagaagaagaaaaagtatgatgtggagaaagct
aaggaagaagtggtgacaaagaaacgtcaaagggaagaaagacgggagaggtttcgtagc
caagataagttgcagaagaaaatgcgcagagattga
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