Lactuca sativa (garden lettuce): 111887479
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Entry
111887479 CDS
T05352
Name
(RefSeq) protein RRP6-like 2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111887479
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111887479
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
111887479
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
111887479
NCBI-ProteinID:
XP_023739421
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All DBs
Position
6:complement(46679963..46683380)
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AA seq
710 aa
AA seq
DB search
MDPSFTQESRTQKSLVASSVKRNSFSSMSKISGCSGEISSNKNINFYVNFEEFKNPIQET
SKKSSQLILEYIPSEKLWGKTQKRFPKNDLKYDEVYNWLININHEMFERFDVSVDEIKKS
RYKEQKLINLTNDTKFQLVNLKKEKVIEKDLLLNSNCPNMEANHSSSVKVVSLEDINAMG
TQRPKVSFHMNWIPKPQDVYNIVVNNVNQPFQHVWLKTSEDGSRLIHPLEKHSVFDFVNK
SMTNTEPLKPPPVETTPLKFVQDVKDLKELVAKLHDTNEFAVDLEHNQYRSFQGLTCLMQ
ISTRTEDFIVDTLKLRVHIGPYLREIFKDPTKRKVMHGADKDILWLQRDFGIYVCNMFDT
GQASRVLKMERNRLDYLLIYFCGVAANKEYQTADWRLRPLTDEMLRYARDDTHYLLYVYD
LMKKRLLSSSTDPNNPDALLVEVYQRSYDVCMQLYEKDILTESSYLNIYGLHEADLNGQQ
LSVVAALCEWRDIVARAEDESTGYVLPNKILIEIAKKMPITNEDLRGLLTSNHPHIERNL
TSIVSIIQNSMYNAAEFEGVARRLKEEHMEMVTSSGAIGANSLSNIAGNQSGKKAGSVVA
GVNWNIPMNGSGFINTKVTLQNMVENICVGNAAGNRKLDLDSKLSSSFPKCLQTSNGRIM
MKQKEEDKDDGKKVIPEKWIVNKSAGGCKDSGGGRPRPRSGLVTDIVNRV
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atggatccatcattcactcaagaatcccgaacccagaaatcattggttgcttcttctgta
aagcgcaattccttttcctcaatgtcaaagatttccgggtgttcaggagaaatctcaagc
aataaaaatattaatttctatgtcaactttgaagaattcaaaaacccaattcaagaaacc
tctaaaaagtcgtcccagttgattcttgaatatattccttctgagaaactatggggcaaa
actcagaagcgttttcctaaaaatgatcttaaatatgatgaagtttataactggttaatc
aacattaatcatgagatgtttgagaggtttgatgtgtctgttgatgagattaagaaatca
agatataaagaacagaagctcataaatctaactaacgatactaaatttcaattagttaat
ctaaagaaagagaaagtcattgagaaagatttgttacttaatagtaattgccctaacatg
gaagctaatcattcttcatctgtgaaggtagtttctttggaagatattaatgcaatgggg
acacaaaggccaaaagtgtcttttcacatgaattggattccaaagccgcaagatgtgtat
aacatagtggtgaacaatgtaaatcaaccttttcagcatgtttggttgaagactagtgag
gatgggtctaggctcatacacccattggaaaaacattcggttttcgactttgttaataaa
agtatgaccaataccgagccattaaagccacctccggttgaaacaacaccattaaagttt
gtacaagatgtcaaagacttgaaagaacttgttgcaaagttgcatgacactaatgaattt
gcggttgatttggaacacaaccaatatcgatctttccaaggtttaacttgcttaatgcaa
atatctacacgaacagaagatttcattgttgatacactcaaactccgtgttcatattggt
ccgtatttgcgagagattttcaaagatccaactaaaagaaaggttatgcatggagcagat
aaagatattttgtggctgcaacgagactttggcatatatgtttgcaatatgtttgacacc
ggacaggcttcaagggtgttgaaaatggagagaaatcgtttggactatttgttgatatac
ttttgtggggttgctgcaaataaagaataccaaactgcagactggcgacttcgcccattg
acagatgaaatgctgagatatgcaagagacgacacacattaccttttgtatgtatacgat
cttatgaaaaaaaggttgctttcatcatcaacagatccgaataatcctgatgcacttctt
gtagaagtgtatcaacgcagttacgatgtatgcatgcaattatatgagaaagacattctc
accgaatcttcatatctcaacatatacgggttgcatgaagctgatctcaatggtcaacaa
ctttccgttgttgcagcgctttgtgaatggagagacattgttgcacgtgcagaagatgag
agtactggatatgtattgccaaacaaaattcttatcgaaattgccaagaagatgccgata
acaaatgaagatctacgtggtttgttgacgtctaatcaccctcacatcgagcgtaacctc
acttccattgttagcattattcagaattctatgtataacgcagctgagtttgaaggtgtt
gctaggagactcaaggaagaacacatggaaatggtaacttcgagtggtgcaataggagca
aatagtttgagcaacatcgctggaaatcaatcagggaagaaagctggaagtgttgtcgcc
ggagtcaactggaatattccgatgaacggatcagggttcataaacaccaaagtaacgctg
cagaacatggtagaaaatatttgcgttggaaatgcagccggaaataggaaattggatctt
gattcaaagctatcatcgagcttcccgaagtgcttacagacctctaatggaaggataatg
atgaagcagaaggaagaagacaaagatgatggtaagaaggtgataccggaaaagtggata
gtgaacaagtctgccggaggttgcaaggatagtggcggaggaaggccaaggcctcgatct
gggcttgttaccgacattgttaaccgggtttag
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