Lactuca sativa (garden lettuce): 111887544
Help
Entry
111887544 CDS
T05352
Name
(RefSeq) putative pectate lyase 11
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv00040
Pentose and glucuronate interconversions
lsv01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
111887544
Enzymes [BR:
lsv01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
111887544
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
111887544
NCBI-ProteinID:
XP_052626768
LinkDB
All DBs
Position
1:68388120..68394612
Genome browser
AA seq
327 aa
AA seq
DB search
MAPVSLPYAHCESKLRALAGQAEGFGRLATGGLHGALYCVTTLADDGPGSLREACSKKEP
LWIVFEISGEIKLKSFLPVSSYKTIDGRGQWIRITGMGLRLAQCEHVIICNLEFQEGRGH
DVDAIQIKPNSKHIWIDRCSLKDYSDGLVDVTRGSTDVTISRCKFGYHDKTILIGANAAH
CDDRNIRVTIHHCLFDGSRQRLPRVRFAKVHLYNNYTRYWAIYAVGASVDSEIYSQCNIY
EAGRDCNVAFKYIPEKAGDKNAPTAGVIVSEGDLFLGGTQSGLKPGNCSFRPSQYYQTCT
VEPATMELKKALEWFAGWQRVPRPGDW
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atggctccagtctcactcccctacgctcactgcgagagtaagttacgagctctcgccggc
caggctgagggattcggccgccttgctaccggtggtcttcatggagcactctactgcgtt
actactctggcagatgatggtcctgggtcgcttcgtgaagcatgtagcaagaaagaacct
ctgtggattgtttttgaaatttcgggtgaaatcaagctcaaatcttttctacctgtgtct
tcatataaaacaatcgatggtagaggacaatggattaggatcactggcatgggccttagg
ttggcccaatgtgaacatgtgattatatgcaatttagagtttcaagaaggcagaggacat
gatgtcgacgccattcaaatcaaaccaaactcaaagcatatatggattgatcgctgtagt
cttaaggattattcagatggacttgttgatgttactcgaggaagcacagacgtcactatt
tcacgttgtaaatttgggtaccatgacaagacgattcttattggagcaaacgctgctcat
tgtgatgacagaaatatccgtgttactattcaccactgtctctttgatggaagtcgtcag
aggcttccacgtgttaggtttgccaaagtacatctgtacaacaactacaccagatactgg
gcgatctatgctgtgggtgccagtgttgattcagagatatactcacagtgtaatatttat
gaagccggacgcgattgcaatgtggcttttaaatatatccctgaaaaggctggtgacaaa
aatgcgccaactgctggcgtcattgtatccgagggagacctatttttaggtggaactcag
tctggcttgaaacctgggaactgctcattccgtccaagccaatactaccaaacatgcacg
gttgaacctgcaacaatggagcttaaaaaggctctcgagtggtttgcaggatggcaacgt
gttccacgtcccggggattggtag
DBGET
integrated database retrieval system
