KEGG   Lactuca sativa (garden lettuce): 111887596
Entry
111887596         CDS       T05352                                 
Name
(RefSeq) uncharacterized protein LOC111887596
  KO
K12586  exosome complex component RRP43
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    111887596
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lsv03019]
    111887596
Messenger RNA biogenesis [BR:lsv03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     111887596
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 111887596
NCBI-ProteinID: XP_023739535
LinkDB
Position
5:330891929..330894560
AA seq 303 aa
MVGSANGATDLSSEMEVDAFRRLFPLRFHERHLLESVRPDARSLGKARETSLALGAVASA
DGSALAKIGCTTMLAAIKMEVMTPSKEAPDEGCVAIDFHMPPICSPIVRPGRPAEAAPVV
SKQLSDTIISSGMIDLKELSLVSGKAAWMAYLDIYCLDADGALFDAALLAAAAAFSHLQI
PVVSLNDDGRIVVVSKENGEKAKNKPVNEEKRKLKLRSIPFALTCILHKNYILADPTAEE
ESIMDTLITIVLDTSCQLVSLYKPGGPALAYESVLQDCIALSRQRVKELQKILNEAILDM
DVD
NT seq 912 nt   +upstreamnt  +downstreamnt
atggtgggttctgcgaatggcgcgacggacttgtcatcagagatggaggttgatgctttc
agaagactttttcctctacgatttcacgagcgccatttgctcgagtccgtaaggcccgat
gccaggtcacttggtaaagccagagaaacgtcattggctttaggggcagtggcatctgcg
gatggatcagcactagcaaagataggctgcactactatgttagctgccattaaaatggaa
gtcatgacaccttcaaaggaagcacctgatgaaggctgtgtagccatagatttccacatg
cctccaatttgttctcctattgttaggcctggcagacctgctgaagctgcacctgttgtg
tccaagcagttatctgacactatcattagttctgggatgattgatctaaaagagttgtca
ttggtcagtggcaaagctgcttggatggcatacctggatatatactgtttggatgctgat
ggtgcactatttgatgctgccctacttgctgcagctgctgctttctcccatttgcaaatt
ccggtggtgtcgttgaatgatgatggaagaattgtggttgtttccaaggaaaatggagag
aaggcaaaaaacaaaccagtgaatgaggagaagagaaagcttaaattgagaagcattcct
tttgcattgacttgcatacttcacaagaactacatcttggctgatccaacggctgaggaa
gaatccatcatggatacattgatcacaattgtattggacacatcttgtcaactcgtgtct
ctttacaagccaggtggtccggctcttgcctatgagtctgtgctccaggattgtattgca
ttgtcaagacaaagagtgaaagagcttcagaaaatcctgaatgaagccattcttgatatg
gatgtggattaa

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