Lactuca sativa (garden lettuce): 111887729
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Entry
111887729 CDS
T05352
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 51
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
lsv
Lactuca sativa (garden lettuce)
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsv03041
]
111887729
03009 Ribosome biogenesis [BR:
lsv03009
]
111887729
Enzymes [BR:
lsv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111887729
Spliceosome [BR:
lsv03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
111887729
Ribosome biogenesis [BR:
lsv03009
]
Eukaryotic type
90S particles
Helicases
111887729
Pre-60S particles
111887729
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
Motif
Other DBs
NCBI-GeneID:
111887729
NCBI-ProteinID:
XP_023739662
LinkDB
All DBs
Position
4:111682563..111686072
Genome browser
AA seq
613 aa
AA seq
DB search
MVVLEKSPNSKIENGEGSNSKKKRKRNKNKKNSGEEEPDLVAQEVAEINDSEKEEEVTAV
KEKKSKRKKKEKKSSEEEKENTETDDNKEEEEGDEGMNMEEEAEKETETKTKKKVKKSGG
DSGIMSSDSFTSLPLSEPTKKAILDMGFQYMTQIQARSIPPLLEGKDVLGAARTGSGKTL
AFLIPAVELLYHACFAPRNGTGVVVICPTRELAIQTHAVAKDLLKYHSQTLGLVMGGAGR
RTESERIVKGVNLLIATPGRLLDHLQNTKGFIFKNLKCFVIDEADRILEANFEEEMKQII
KILPKTRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTRVTNEGLQQGYCVVPSAK
RFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLKYIQVDCFDIHGKQKQQKRTTTFFDF
CKAEKGILLCTDVAARGLDIPSVDWIVQYDPPDEPKEYIHRVGRTARGEGAKGNALLFLI
PEELQFLRYLKAAKVPVKEYEFDEKKMANVQSHLEKLVANNYYLNKSAKDAYRSYLLSYN
SHSMKDIFNVHRLDMQAVAASFCFSNPPKVNLNIDSNASKFRQKTRSRNGFSDSNPYGRN
NRDDNSKTQVVRY
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggtggttcttgagaaaagccctaattccaaaatcgaaaatggcgagggttctaacagc
aaaaagaaacgaaaaaggaacaagaacaagaagaacagtggagaggaagagcctgatttg
gtagcacaggaagtagcagaaatcaatgacagtgagaaggaagaggaagttacagcggtg
aaagagaagaaaagtaagaggaagaagaaagagaagaaatctagcgaagaagaaaaagaa
aacacagaaacagatgataataaagaggaggaagaaggtgatgagggtatgaacatggaa
gaagaggcggaaaaggagacagagacaaagacaaagaagaaggtgaagaaaagtggtggt
gattctggaatcatgagtagcgattcatttacttctttgcccttatctgaaccaacaaag
aaagctattcttgatatgggtttccagtacatgactcagattcaagctaggtcaattcct
cctcttttggaaggaaaggatgttcttggagctgcaagaacaggttctgggaaaacttta
gcctttcttataccagcagtcgagttgttatatcatgcttgctttgctcctcgaaatgga
actggtgtcgttgtcatctgtccaacaagggagcttgcaatacagactcatgcagttgca
aaggatcttctcaagtatcattcacagactctagggttggttatgggtggtgcaggaaga
agaacagagtctgagcgtattgtgaaaggagtaaatttattgatagctacccctggaaga
cttcttgatcatcttcagaatacaaaaggctttatttttaagaacctaaagtgctttgtg
attgatgaagctgacagaatattggaagcaaactttgaagaggaaatgaagcagataatt
aaaatcttacccaagacaaggcaaactgcactcttttctgcaactcagacaaagaaggtt
gaggatcttgcacgcttatcatttcaaactactccagtgtacattgatgtagatgatggg
aggacaagagtgacaaatgaaggactgcaacaagggtattgtgtggtgccaagtgcaaag
agattcatacttctctactctttcttgaaaaggaatctctcaaagaaagtcatggttttc
ttttcttcatgcaattcagttaaattccactctgagcttctcaaatacattcaagtcgat
tgttttgatattcatggaaaacaaaaacagcagaaaagaaccacaactttttttgatttc
tgtaaagctgaaaaagggattttgttatgtactgatgttgctgctcgtggtcttgatatt
ccatctgtggattggattgtgcaatatgatcctccagatgaacctaaggaatatatccat
cgagtgggtcgaactgctcgtggagaaggtgcaaaaggaaatgcattgctttttcttatc
cctgaagagttacagtttcttcgttacctcaaggctgcaaaagtacctgttaaggagtac
gagtttgatgaaaagaaaatggcaaatgtgcagtctcatctggaaaaactggttgccaat
aactattacttgaacaagtctgcgaaagatgcgtacagatcgtacttgttatcttataat
tcgcattccatgaaggatatttttaatgttcatcgtctagatatgcaggctgttgcagca
tcattctgcttttcaaaccctccaaaggtaaacctaaacatagacagcaatgcatcaaag
ttcagacaaaaaacacgaagcagaaatggatttagtgacagtaatccttatggcagaaac
aatcgtgatgacaacagcaaaacgcaagttgtcagatattaa
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