Lactuca sativa (garden lettuce): 111887781
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Entry
111887781 CDS
T05352
Name
(RefSeq) WD-40 repeat-containing protein MSI1
KO
K10752
histone-binding protein RBBP4
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03082
ATP-dependent chromatin remodeling
lsv03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
111887781
03083 Polycomb repressive complex
111887781
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lsv03036
]
111887781
Chromosome and associated proteins [BR:
lsv03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
111887781
Histone modification proteins
HAT complexes
HATB complex
111887781
HDAC complexes
Sin3A-HDAC complex
111887781
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
111887781
PRC2.2
111887781
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
111887781
Heterochromatin formation proteins
Other heterochromatin formation proteins
111887781
Chromatin remodeling factors
NuRD complex
111887781
NuRF complex
111887781
NuRF complex (fruit fly)
111887781
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
CAF1C_H4-bd
WD40_Prp19
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_EML_2
WDR55
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WD40_RFWD3
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_EML
EIF3I
Beta-prop_WDR90_POC16_2nd
WD_LRWD1
eIF2A
Beta-prop_RIG_1st
NBCH_WD40
MIOS_WD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR19_1st
Beta-prop_NUP159_NUP214
Beta-prop_TEP1_C
Motif
Other DBs
NCBI-GeneID:
111887781
NCBI-ProteinID:
XP_023739697
LinkDB
All DBs
Position
7:141151909..141154635
Genome browser
AA seq
423 aa
AA seq
DB search
MGKDEDDMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDRDEPAGKD
YSVQKLILGTHTSENEPNYLMLAQVQLPLEDAEYDARHYDDDRSDFGGFGCANGKVQIIQ
QINHDGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHNTE
GYGLSWSKFKQGHLLSGSDDAQICLWDINGTPKNKSLDAMQIFKVHDGVVEDVAWHLRHE
YLFGSCGDDQYLHIWDLRSQSVNKPVQSVMAHQSEVNCLAFNPFNEWVLATGSTDKTVKL
FDLRKITTALHTFDCHKEEVFQVGWNPQNETILASCCLGRRLMVWDLSRIDQEQTPEDAE
DGPPELLFIHGGHTSKVSDFSWNPCEDWIVASVAEDNILQIWQMAENIYHDEDDMPAEES
RGA
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atggggaaagacgaggacgatatgcgaggtgagatagaggagaggctcatcaacgaagaa
tacaaaatttggaaaaagaacacaccgtttttgtacgatttggtcatcacgcacgcgcta
gagtggccttcgctcaccgtggaatggctcccggaccgtgatgagcccgcaggaaaagac
tattccgtccagaagttaatccttgggacccacacatccgagaatgagcctaattacctc
atgctagcccaggttcagttaccgcttgaagatgctgagtacgatgctcgtcattatgat
gatgaccgctctgattttggggggtttggttgcgccaatggcaaggtgcaaataatccag
caaataaatcatgatggagaggtaaacagggctcgttatatgcctcaaaaccctttcatt
attgccacaaaaacagtgagtgcagaagtctatgtttttgattatagcaaacatccatca
aagcctcctctagatggagcatgtagccctgatttaagattgagaggccacaacactgaa
ggatatggcttatcatggagtaaattcaaacaagggcatttgttgagtggctctgatgat
gctcaaatttgcttgtgggacattaatggaactcccaagaacaaatcactcgatgctatg
caaatatttaaggttcatgatggtgttgtagaagatgtagcatggcatttaaggcatgaa
tatttatttggttcatgtggagatgatcaatacttacacatatgggatttgagatctcaa
tctgttaacaaacctgttcaaagtgtaatggctcatcaaagtgaggtcaactgcttagca
ttcaatccttttaatgaatgggttttagcaaccgggtcaaccgacaaaactgtcaaactg
tttgacttacgaaaaatcaccactgcccttcatacctttgattgtcacaaggaggaggtg
tttcaagttggatggaatccacagaatgagacaattttagcttcttgttgtcttgggagg
agacttatggtgtgggatcttagtaggattgatcaggaacaaacaccagaggatgcagaa
gatgggccaccagagctgttgtttattcatggtggacatacaagtaaagtatcagatttc
tcatggaatccatgtgaagattggattgttgcaagtgttgcagaagataatattcttcaa
atatggcagatggctgaaaatatttaccacgatgaagatgatatgccagctgaggaatct
cgaggtgcttga
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