Lactuca sativa (garden lettuce): 111888196
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Entry
111888196 CDS
T05352
Name
(RefSeq) vacuolar protein-sorting-associated protein 11 homolog isoform X1
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv04142
Lysosome biogenesis
lsv04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
111888196
04148 Efferocytosis
111888196
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lsv04131
]
111888196
Membrane trafficking [BR:
lsv04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
111888196
Hops complex
111888196
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS11_N
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS18_solenoid_2nd
VPS11_C
Clathrin
TPR_Vps41
zf-C3H2C3
Beta-prop_WDR36-Utp21_1st
GH123_TIM
zf_RING_Vps8_fungal
zf-RING_6
zf-C3HC4_2
zf-RING_5
Beta-prop_WDR3_1st
OCRL_clath_bd
Motif
Other DBs
NCBI-GeneID:
111888196
NCBI-ProteinID:
XP_023740105
LinkDB
All DBs
Position
9:complement(161412838..161416715)
Genome browser
AA seq
940 aa
AA seq
DB search
MYQWRKFEFFEEKYAGKCLVPDEVAGKIECCSSGRGKIAVGCEDGTVSLLDRGFKFSYGF
QAHTSSVLFIQQLKQRNFLLTVGEDEQISPQLSSVCLKVFDLDKTQPEGTSTPIPDCIQI
LRIFTNQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIQGDIARERIKRFMLQVEKSQ
DKSQCGITGMGFCVDGKAFHLFAVTPTSVSLFNLQTQPAARQTLDHIGSNVNSVAMNDRL
ELIIGRPEAVYFYEVDGRGPCWAFEGEKKFLGWFRGYLLCVIADQRSGSNTFNIYDLKNR
LIAHSIVTKEVSHMLCEWGSILLIMNDKSALCIGEKDMESKLDMLFKKNLYTVAINLVQS
QQADAAATAEVLRKYGDHLYMKQDFDEAMSQYIHTIGHLEPSYVIQKFLDAQRIYNLTNY
LEKLHEKGLASKDHTTLLLNCYTKLKDVDKLNVFIKSEDGEIKFDVETAIRVCRAANYHE
HAMFVAKKSGRHEWYLKILLEDLGRYDEALQYISSLDQSQSGVTVKEYGKILIEHKPMET
IEILMGLCTEGASNGTSYSYMLPSPVDFLNIFVHYPRSLMNFLEKYITKVKDSPAQVEIH
NTLLELYLSSDLNFPSMSLENGTTTNGNGKLVESPKEDTKNMENDHEERLQKGLLLLKTA
WPLDQEQPLYDVDLAIILCEMNSFKEGLLYLYEKLKLYKEVIACYMRSHDHEGLIGCCKR
LGDSGKGGDPTLWADLLKYFGELGEECSKEVREVLNYIERDEILPPIMVLQTLSSNPCLT
LSVIRDYIARKLEHESKLIEEDRRMIDKYQEETLTMRKEIQDLRTNARIFQLSKCSACTF
TLDLPAVHFMCMHSFHQRCLGDNEKECPECAPEYRSVVEMKRNLEQNSKNQDQFFKQVRN
SKDGFSVIAEYFGKGIISKTSKKESGGGSLNSNGNSTHGF
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atgtatcaatggaggaaattcgagttctttgaggagaaatacgccggaaaatgtttggtc
ccggatgaagtcgctggaaaaatcgagtgttgctccagcggaagggggaaaatcgcggtg
ggatgtgaagatgggactgttagtttactagatcgaggttttaagttcagctatggattc
caagctcacacttcctctgttttattcattcaacaactcaagcaacgcaacttcctacta
actgttggagaagacgaacaaatatctccacaattatcatctgtatgcctgaaggttttt
gacctagataaaactcaaccagagggtacaagcacaccaattcctgattgtatccaaata
ctacgaatattcacaaatcaattcccagaagcaaagataacatcatttctagttctagaa
gaagctccaccaatattgctgatagctattggactagacaatggttgcatttattgcatc
caaggtgatattgcgcgtgaacgcatcaaacgattcatgcttcaagtggagaaaagtcaa
gataaatcccaatgtggtattactggaatgggtttttgtgttgatgggaaagcttttcat
ttgtttgcagttactccaacttctgtaagcttgtttaacttgcagactcagccagctgct
cgacaaaccctagatcacattgggagcaatgtcaatagtgtcgccatgaatgatcgcctg
gagcttatcattggtcgacctgaggcagtatatttctatgaagttgatggtagaggtcca
tgttgggcttttgaaggagaaaaaaagttcctcgggtggtttcgtggatacctcttatgt
gtaattgcagaccaaagaagtggctcaaacaccttcaacatctatgaccttaaaaaccga
ttaatcgcacacagtatagtaaccaaagaagtctctcatatgctttgtgaatggggaagc
atcctccttatcatgaacgataaatcggctttatgtattggagaaaaagacatggaaagc
aaactcgacatgcttttcaaaaaaaacctttacacagtcgccattaatcttgttcaaagt
caacaagctgatgcagctgcaactgctgaagttttaagaaaatatggtgatcatttatac
atgaagcaagattttgatgaagccatgagtcaatacattcatacaattggtcatctagaa
ccttcttatgtcatccagaagttcctagatgcacaaagaatctacaacctcacaaattac
ctcgagaagctacacgaaaagggtctcgcgtcaaaagaccatactacccttctcttaaac
tgttacaccaaattgaaagatgttgacaagttgaatgttttcatcaaaagtgaagatggt
gagattaaatttgatgtggaaaccgcgattagggtttgtagagctgcgaattatcatgaa
catgcaatgtttgttgctaaaaaaagtggaagacatgaatggtatttaaagattttgctt
gaggatttgggaagatatgatgaggctttgcagtatatttctagccttgaccaaagtcaa
agtggggtcactgttaaagaatatgggaaaatacttatcgagcataaaccaatggaaaca
atcgaaatcctcatgggactttgcactgaaggggcatcaaatgggacttcatattcctat
atgttaccttcacccgttgactttctcaacatttttgttcattatccaagatctttaatg
aattttcttgaaaagtatataacaaaagtcaaagattcacccgcacaagtcgaaattcac
aacactttattggaattatacttgtcaagtgacttaaacttcccatcaatgtcactagaa
aatggcacaactacaaatggaaatgggaaattagtcgaatcacctaaagaagatacaaaa
aacatggaaaatgatcatgaagaaaggcttcaaaaggggcttttgttgttgaaaaccgca
tggcctttggatcaagaacaaccgttgtacgatgttgatttggctataatcttatgcgaa
atgaattcttttaaagaagggcttttgtatctttatgaaaagttgaaactttataaagag
gtgattgcttgttacatgaggtctcatgatcatgaaggcttgattggttgttgtaagagg
ttaggggattcagggaagggtggtgatccgactttatgggctgatttattgaagtatttt
ggtgaattaggggaagaatgttcaaaagaagtaagagaagttttgaattatatcgaaaga
gatgagattttgcctcctattatggttttacaaacactttcttcaaatccatgtcttact
ctttctgttattcgggattatattgctagaaaattggaacatgagtcaaagcttatcgaa
gaggatcgtcgcatgatcgataaataccaggaagaaacattgacaatgagaaaagaaatc
caggatttaagaacaaatgcaagaatctttcaactaagcaaatgtagtgcatgtactttc
acacttgatctgccagctgtccacttcatgtgtatgcattcttttcatcaacgttgtctt
ggagacaatgaaaaagaatgtcccgaatgtgcccctgagtacagatctgttgttgaaatg
aaaagaaacttggaacaaaattccaagaatcaagatcagtttttcaagcaagttaggaat
tcaaaagatggattttcagtaattgctgagtattttggaaaagggattattagcaaaact
agtaaaaaggaatcaggaggaggatctttaaattcaaacggtaattccacccatggtttc
tga
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