Lactuca sativa (garden lettuce): 111888200
Help
Entry
111888200 CDS
T05352
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111888200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111888200
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111888200
mRNA degradation factors
5'-3' decay
Decapping complex
111888200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_EML_2
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
111888200
NCBI-ProteinID:
XP_023740111
LinkDB
All DBs
Position
9:complement(159855550..159860851)
Genome browser
AA seq
1324 aa
AA seq
DB search
MASPGNQNQQPGGGPFDVQRFFNPSSSPPPITTNPNTTFQNPNIPYPPPSSAASYPPPTV
SGALYSYSPQTNPLYHPQFHIPSPPFQPDNPMPSSNLQHQRSVPYPTPPLQPPSPNNNPN
PNHGARLMALLSAPPPTTIDTSSQSPMPMPQPTNPMLPSSLVPTLHSGSGPLRMPSSKLP
KGRHLSGDRVLYDIDVRLPGEVQPQLEVTPITKYGSDPGLVVGRQIAVNKTYICYGLKLG
AIRVLNINTALRSLLKGLAQRVTDMVFFAEDVHLLASASIDGRVYVWKITEGTDEEDKPQ
ITGKIVVAIQIVGEGESVHPRVCWHCHKQEVLVVGIGKRVLRIDTTKVGRGEVYSAEEPL
KCPVDKLINGVQFVGSHDGEVTDLSMCQWMTTRLVSASVDGTIKIWDDRKSSPIAVLRPH
DGLPVNSVTFLTAPQRPDHIILITGGPLNREIKIWASDSEEGWLLPSDADSWHCSQTLEL
KSSSEARVENAFFNQVVALSQAGLLLLANAKKNAIYVVHLEYGLNPEATHMDYIAEFTVT
MPILSFTGTSDLLPHGEQIVQVYCVQTQAIQQYALDMSQCLPPPVDSVAASVAYERSDST
VSRDAIAPNAEVLTGLEASASGNKTEIPLPVSVSNSDGSSILRQPSTSSLPEVPLSVEPP
PVASSPTLSRKLSDLKSPVSIHDEPKVIEYSVDAAHSNISNDSIIDESKDGGKFKHPTHL
VTPAELMATLSSEISHVSEQKNDVDANIQDVILNPDSQNAEVEVQVVGETGKSQNLEPEL
HAFASEQMEKSFSSQASDFRRVETYFDNPGESQTVGQGQTSGGLEEVGQDAKIDLSGQSE
TVIVTPPQVTSSSGKGKKQKGKNVQGSNSSPLNVYNSTDSSNDPGISSSSVPSVEAILSQ
LNSMQETITQVLLNQKEIQKQTPGMVTSSITKEGRKIEASIGKSMEKTYKTNYDALWVKT
QEEFAKQEKSNRDRSQQISALVTNGYKELLVTWEKMLKKETSALVTAVVRAVSPVIEKTV
ASAITEAFQRGVADKSVNQLEKSVNSKLEATVARQIQTQFQTSGKQALQEALKSSMEGSV
VPAFEMSCKAMFDQVDASFQKGMLEHTAAALQQTESTHSPLALALRDAINSASSMTQTLS
GELADGQRKLVALALAGANSESVNPLISQISNGPLGSFHDKMEAPLDPTKELSRLVYEHK
YEEAFTSALQRSDVWIVSWLCTQVDLQGLLARNPLPLSQGVLLSLVQQLACDIGNETSKK
LAWMMDVVVAIKPSDGMIAMHVRPIFEQVCSILNHQLSLPTTSVSELSSIRVVVRLINST
LRTL
NT seq
3975 nt
NT seq
+upstream
nt +downstream
nt
atggcttcccctggaaaccagaaccaacaaccaggcggaggaccattcgatgttcaaaga
ttcttcaacccttcttcttccccaccaccaatcacaacaaaccctaataccaccttccaa
aaccctaacatcccttatcctccaccgtcctcagccgcctcgtatcctccacccaccgtc
agcggcgcgctttactcatactctcctcaaaccaaccctctttaccaccctcaattccat
atcccatcacccccttttcaaccggacaaccccatgccttcctctaacttacaacaccag
cgatccgttccttatcctacaccccctctccaaccccctagccctaataacaaccctaac
cctaaccatggtgcccgattgatggctcttttaagcgctccgccaccaaccaccatcgat
acctcgtcacaatcacccatgcctatgcctcaacctactaatcctatgcttccgtcatcg
ttggttcctacattgcattctggttccggtccattgcggatgcctagcagtaaactccca
aagggtcgtcatttgagcggtgatcgtgttttatatgatatagatgttaggttgccggga
gaggttcaacctcaacttgaggtcactcccattactaagtatgggtctgatcctggtctc
gtcgtgggtcgtcagattgctgttaacaagacctatatatgttatggtttgaaactggga
gcaatcagggttcttaatataaacaccgctttaagatcactgcttaaaggtcttgctcag
agggttacagatatggttttcttcgccgaggatgttcatcttctagctagtgctagtata
gatggacgtgtttatgtgtggaagattacagagggcacagatgaagaggataagccacag
atcaccgggaagatagttgttgccattcagattgtaggagaaggtgaatctgttcatccc
agagtttgttggcactgtcacaaacaagaagttcttgttgtaggaattggaaaacgtgtg
ttgcgaattgatactacaaaggtcgggagaggtgaagtgtactctgcagaagaacctctc
aaatgccctgttgataaattgattaatggagttcagtttgttggtagtcatgatggagaa
gtgactgatttatcaatgtgtcaatggatgactacccgtttggtttctgcttcagtagat
ggaactataaagatttgggatgatcgcaagtcctctccaattgcagttttgaggcctcat
gatggtctacctgtcaactctgtcacattcttaactgctcctcaacgcccagatcacatc
atacttatcacagggggtccattgaatcgagaaataaaaatatgggcttctgacagtgaa
gaaggatggttgcttccaagtgatgctgactcatggcattgttcacagacattggaattg
aagagttcatccgaggctagagttgaaaatgcattctttaatcaagtggttgcattatct
caagcaggacttctcttactagcaaatgcaaagaaaaatgctatttatgttgtccacttg
gaatatggtctcaatccagaagctactcacatggattacattgcagagtttacagtaaca
atgccaatattaagcttcacaggtactagtgatttgttacctcatggagaacaaattgtt
caggtttactgtgtccaaacacaagccattcagcaatatgctttggacatgtctcaatgc
ttaccccctccagtcgatagtgttgctgcttctgttgcatatgagagatcagattcaact
gtttcacgtgatgcaattgcaccaaatgctgaagtgttaactggtttggaagcttcagct
tctggaaataagactgaaatacccctccctgtttctgtatcaaactctgatgggagttct
attttgagacaaccctcaacttcttctttacctgaagttcctctttcagttgaaccacct
cctgttgcatcaagtcctactttgtcaagaaaactttcagatttgaaaagtccagtcagc
atccatgatgagccaaaagttattgaatactcagtggatgctgctcattcaaacatatct
aatgactcgataattgatgaaagtaaagatggtgggaagtttaagcatccaactcatttg
gtaactcctgctgaattaatggcgacattgtcctctgaaataagtcatgtttctgagcaa
aagaatgacgtggatgcaaacatacaggatgtgattctaaaccctgattcacaaaatgct
gaggtggaagtccaggttgttggtgaaactggaaaaagtcaaaaccttgaacctgagctt
catgcttttgcttcagagcaaatggagaaatctttttcatcacaggcatcagattttcgg
cgtgtggaaacatactttgataatcctggagaaagtcaaacagttggtcaaggtcaaact
tcaggtggacttgaagaagttggtcaagatgcaaaaattgatctttcaggacaaagtgag
acagtgatagtgacacctccccaagtgacttcatcttctggaaaaggaaaaaaacaaaag
ggaaagaatgttcaaggatcaaactcaagtccattaaatgtttataattcaacagattct
tctaatgatccaggaatcagttcttcaagtgttccctctgttgaagccatactttcacaa
cttaattccatgcaagaaaccatcactcaggtgttactcaaccaaaaggaaatccaaaaa
cagactccaggaatggtgacatcatcaatcacaaaagaaggtagaaaaatcgaggcatcc
ataggaaaaagcatggagaaaacttataagactaattatgatgctctttgggtcaaaaca
caagaagagtttgcaaaacaggaaaagtcaaaccgagatcgaagtcaacaaatctcagct
ttggttacaaatggctacaaggagttacttgtaacatgggagaaaatgttgaagaaagaa
acatctgcacttgtgacagctgttgttcgtgcagtttctccagttattgagaaaacagtc
gcttcagccatcacagaggcttttcagagaggcgttgctgataaatctgtaaaccaactt
gagaaatctgttaattctaaacttgaagctactgttgcaagacaaatccaaactcagttt
caaacttctggcaaacaagcattacaggaagcacttaagtcaagtatggagggttctgta
gtccctgcttttgagatgtcttgcaaggcgatgtttgatcaagttgatgcatcttttcaa
aagggaatgctggaacacacagctgcagctcttcagcaaactgagtcaactcattctcct
ttagcacttgccttgagggacgcgataaattcagcatcctccatgactcaaacattaagt
ggtgaactggctgatggtcaaaggaagttggtagctcttgcacttgcaggggcaaattcg
gaatcagtgaatcctttgatctcccaaatcagcaatggacctttaggcagtttccatgat
aagatggaagcaccattggatccaacaaaagagctttctagattggtatatgaacacaaa
tatgaggaggctttcacttctgctcttcaaagaagtgatgtttggattgtgtcatggtta
tgcactcaggttgacttacaggggttattagcaaggaatcctttgccattgagtcaaggg
gtacttttgtcattggtgcaacagttggcatgtgatattgggaatgagacatcaaagaaa
cttgcatggatgatggatgtggttgtagccataaagccatcagatgggatgatagcaatg
catgttagaccaatatttgaacaagtttgctccattttaaaccatcaactaagtctcccc
acaacttcagtttcagagctttcaagcatacgtgttgttgtcaggcttatcaactccaca
ctcaggaccctgtaa
DBGET
integrated database retrieval system
