Lactuca sativa (garden lettuce): 111888292
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Entry
111888292 CDS
T05352
Symbol
LOC111888292
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03013
Nucleocytoplasmic transport
lsv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111888292 (LOC111888292)
03015 mRNA surveillance pathway
111888292 (LOC111888292)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111888292 (LOC111888292)
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111888292 (LOC111888292)
mRNA cycle factors
P-body specific factors
111888292 (LOC111888292)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
DUF3549
Motif
Other DBs
NCBI-GeneID:
111888292
NCBI-ProteinID:
XP_052624628
LinkDB
All DBs
Position
2:211862195..211868276
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AA seq
1164 aa
AA seq
DB search
MEHPDDDSHGVGENQSKQDDEVSRREELKKSLVAKLALRQSNLNPERPDSSALRTLDSSI
KRNTAVIKKLKQINEEQRESLMDELKNVNLSKFVSEAVAAICDAKLKSSDIQAAVQVCSL
LHQRYKDFSPTLVQGLMKTFFPGKSSEDVDADRNLKALKKRSALKLLLELFFDGVIEDTG
IFITIIKDLASLEHLKDRDTAHTNLSLLASFARQARYFIGLSHAGEELVEEFFKGLNITS
DQKKVFKKAFHTYHDAAVELLRSEHTSLRQLEHENAKILNAKGELSEENASSYEKLRKSY
DQLYRGVSALAEALDMQPPVMPEDGHTRLTTGDDVSSPGTGKEASVAEALWDDEDTKSFY
ECLPDLRAFVPAVLLGEAEQKGNDQSSKASDQPSDSTTPESDQGQIAAQDTAETSVSEKK
KDDDEKDKGKEKEKEKDGEIKAEIEKEKLRGPEGTNLDGLIQRLPGCVSRDLIDQLTVEF
CYLNSKASRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVPSMLLLYLEEEFNSLI
NKKDQMNIETKIRNIRFIGELCKFKIAPAGLVFSCLKACLDDFTHHNIDVACNLLETCGR
YLYRYPDTNVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSARVSKIRPPLH
QYIRKLLFTDLDKSSIEDVLRQLRKLPWSECEPYLLKCFLKVHKGKYGQIHLIASLTAGL
SRYHDEFAVAVVDEVLEEIRLGLEINEYGMQQRRIAHMRFLGELYNYEHVDSSVVFDTLY
LILIFGHGTEEQDVLDPPEDCFRIRMIITLLETCGHYFGRGSSKRKLDRFLIHFQRYILC
KGPLPLDIEFDLQDLFGDLRPNMTRYSTIEEADAALVQLEEHERSGEKHHTEQEKPRSMS
GSSSSVNGQVVVANGMEEENGGTHHELESDSASQGSTMDPDGNDDEEELDDDACDSEDDY
AGPASDEDDEIHVRQKVMLVDPEEEAEFDREFRALMQESLDSRKLELRARPTLNMMIPMN
VFEGGQGHGSGRVSEGESGDEGTEYEEGGGRKEVQVKVLVKRGSKQQTRQMLIPSDCSLV
QSTKQKEAAELEEKQDIKRLVLEYNDREEEELNALGNLPVGWSQSGGGRVVYRGHSWEGH
GGRSGSRHRYPHHTGGGYYYSRRK
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atggaacaccctgatgatgattcccatggagttggtgaaaaccagagcaagcaagatgat
gaggtatcacgccgtgaagaattaaagaaatccttagtagcaaaattggctcttcgtcag
agtaatttgaatcctgaaagacctgactccagtgccttgcgaacattggactctagcatc
aaacgtaacacagcagttatcaaaaaacttaaacaaatcaatgaagagcagcgtgaaagt
ctgatggatgaattaaaaaatgtcaacttaagcaaatttgttagtgaagcagtggctgca
atctgtgatgccaagttaaaaagttcagacatacaggctgcagttcaggtctgttcattg
cttcatcaaagatacaaagatttttctccaactttggtccaaggccttatgaaaacattc
tttcctgggaaatcttcagaggatgtagatgcagacagaaacttaaaggccttgaaaaag
cgaagcgctttaaaacttctacttgaactgttttttgatggagttatagaagatactgga
atttttataaccatcattaaggatcttgcgagtttagaacacctaaaggatagagacaca
gctcatacaaatctgtctcttcttgctagttttgctagacaggcaaggtacttcatagga
ctttcacatgctggagaagaacttgttgaagagttttttaaggggcttaatatcacttca
gatcagaagaaggtgtttaaaaaggcgtttcatacgtatcatgatgctgcagttgagcta
cttcggtctgaacacacttcacttcgacaactggagcatgagaatgcaaagattttaaat
gccaaaggggagctgagtgaggaaaatgcttcatcatatgaaaaattacgcaaatcttat
gatcaactttatcgaggtgtttctgcgttagcagaagcacttgatatgcaaccacctgtg
atgccagaggatggtcacacgaggctcacaacaggtgatgatgtctcatctcctggtact
ggaaaagaggcttctgttgctgaagctttgtgggatgatgaagacacaaaaagtttttat
gaatgtttacctgatctcagggcatttgttcctgctgtattattgggtgaagcggagcag
aaaggaaatgatcagtcatcaaaagcatcagatcaaccaagtgactcaacaacacccgag
tctgatcaaggtcagattgctgcccaagacactgcagagacatctgtaagtgagaaaaag
aaagatgatgacgaaaaagataaaggaaaagaaaaagaaaaagaaaaagatggtgaaata
aaagctgaaattgaaaaagagaagcttcgaggtcctgaaggaaccaacttagacggctta
atacagaggcttcctggctgtgtgagccgtgacttgattgaccaattgactgtggaattt
tgttatttaaattcaaaagcttcccgcaaaaaactcgttcgtgctttgttcaatgtgccc
agaacatctctggaactgttaccctactattcacgaatggttgccacactgtcaacttgt
atgaaggatgtcccttctatgctcttgctgtatttggaagaagaattcaactctctaata
aataaaaaggatcaaatgaacatcgagacaaagatcaggaacattcggtttatcggcgag
ctttgtaaattcaaaatcgcaccagctgggctcgttttcagctgcctaaaggcatgtttg
gacgattttacccatcacaacatagatgtcgcctgcaatcttctggagacatgtggcaga
tatctttatcgttaccctgatactaatgtacgcatggcaaacatgttggagattctaatg
cgtctaaaaaatgtgaaaaatctggatcctcgtcatagtactcttgttgagaatgcttat
tatttatgcaaaccacctgaacgttctgcaagagtctccaaaattcgcccccctttacat
cagtatatcagaaagctactctttacagaccttgacaagtcttcaattgaagatgtattg
agacaactccggaagttaccatggagtgaatgtgaaccctatcttttaaaatgctttttg
aaggttcataaaggaaaatacggtcaaattcacctgattgcttcactaactgctgggttg
agtcgctaccatgatgagtttgcagttgctgtagtcgatgaggttttggaagaaataagg
ttgggattggagataaacgaatatggaatgcagcaaagacgaattgctcatatgcgattc
ttaggcgagctatacaattatgaacatgtggattcttcagttgtttttgatacgttgtat
ctcattctcatttttggtcatggaacagaagagcaagatgtgcttgatccacctgaagac
tgttttcgcattaggatgatcatcacacttctggagacctgtgggcattactttggtcga
ggttcatcaaagagaaaactggatcgatttctgattcattttcaacgttacatactctgc
aaaggtccacttcctctagatatcgaatttgacttgcaggatttgtttggtgatttacgt
ccaaacatgactcgttattccaccattgaagaagctgatgctgctctggttcagctggag
gaacatgaacggtcaggtgagaagcaccacacagagcaggaaaagccaagaagcatgtcg
ggcagctcgtcctcagtcaacggtcaggttgttgttgcaaatggtatggaagaagaaaac
ggtgggacccatcatgaactggaatccgacagtgcatctcagggcagcaccatggatcca
gacgggaacgatgacgaggaagagctcgatgacgatgcatgcgacagcgaggatgattac
gctggccctgcttctgacgaggatgacgaaatccacgtcagacagaaagtcatgttggtt
gaccccgaggaagaagccgaatttgaccgagaatttagagctctaatgcaggaaagcttg
gattcaaggaagctggagttgcgggcccggccgacactgaacatgatgataccgatgaat
gtgtttgagggggggcaggggcatgggagtggaagggtgagtgagggtgaaagtggggat
gaaggaacagagtatgaagagggtggtgggcgaaaggaggtgcaggtgaaagtgctggtg
aaacgtgggagcaaacagcaaacgaggcagatgttgataccgagtgactgttctctggtt
cagagcactaaacagaaggaagcagcagagttggaagagaaacaagatatcaagaggttg
gttttggagtataatgatagggaagaggaggagcttaatgccttggggaatcttccagtt
ggatggagtcagagtggtggggggagagtggtctacagaggccactcttgggaaggtcat
ggcgggaggtcgggctcccgtcataggtacccccatcatactggcgggggatactattat
agcagaagaaagtga
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integrated database retrieval system
