Lactuca sativa (garden lettuce): 111888773
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Entry
111888773 CDS
T05352
Name
(RefSeq) exosome complex component RRP4 homolog
KO
K03679
exosome complex component RRP4
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111888773
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111888773
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
111888773
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
111888773
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
111888773
NCBI-ProteinID:
XP_023740651
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All DBs
Position
2:complement(105220..109162)
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AA seq
325 aa
AA seq
DB search
MRGIELSLNQTQKLRLQRALELLESLSSGTNSDASVTVADSIPVNQEDGVLKGHGTTELE
GEVVATVCGVIERVNKLVYVRTLRARYKPEVGDIIVGRVIEVAPKRWRLEINFSQDAVLM
LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRDFMRDGSLQLQARSQKYGKLERG
QMLTVSPYLVKRRKQHFHHLQQYGIDLILGCNGFIWVGEHVETKDNMVEDEPIKPPNKSQ
TTLEEQEQTYTPLETRQNICRIANAIRVLSTLGFSITLDVIQEVVDLSSSKGLNIHEMLA
AEFSVLVAEREAERRSSSTSTQRKR
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
atgagaggcattgagctatcattgaatcaaacacagaaactaaggctgcaaagagcactc
gaactgttggaatctctgtcttcaggaaccaattctgatgcttccgtcactgtggccgat
tctatccccgttaaccaagaagatggtgttctcaagggtcatgggacgacagagcttgag
ggtgaggtcgtggcaaccgtgtgtggagtaatcgaacgtgtaaataaattggtctatgtt
cgcactttgagagccaggtataagcctgaggttggtgatatcatagtaggccgtgttatt
gaggttgctccaaagcggtggagattggagattaattttagccaagatgcggtattgatg
ctttcttcaatgaatttacctgatggaatccagaggcgacggactgcagttgatgagctc
aacatgcgtaccatttttgaagagaatgacgtcatctgtgctgaagtccgtgatttcatg
cgtgatggtagtctacaactgcaagcaaggagccagaaatatggaaagctagaaaggggt
cagatgctgacagtatctccatatctagtaaagaggcgcaaacaacatttccatcatcta
caacagtatggaatcgacctcatacttggttgtaatggcttcatctgggttggtgaacat
gtcgaaactaaagataacatggtagaagacgaaccaattaaacccccaaacaaatcacaa
acaacccttgaagaacaagaacagacctacactccattagaaaccaggcaaaacatatgc
aggattgcaaatgctatcagggtgttgtcaacattgggatttagcattacacttgatgtg
attcaggaggttgttgatctgagcagctccaagggcctgaatatacatgagatgcttgct
gctgagttttctgttttggttgctgaaagagaagctgagcgaagaagctcctcaacctca
actcaaagaaaacgataa
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