Lactuca sativa (garden lettuce): 111889052
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Entry
111889052 CDS
T05352
Name
(RefSeq) SWI/SNF complex component SNF12 homolog
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
111889052
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsv03021
]
111889052
03036 Chromosome and associated proteins [BR:
lsv03036
]
111889052
Transcription machinery [BR:
lsv03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
111889052
Chromosome and associated proteins [BR:
lsv03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
111889052
PBAF complex
111889052
GBAF(ncBAF) complex
111889052
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
111889052
NCBI-ProteinID:
XP_023740958
LinkDB
All DBs
Position
2:187713199..187715681
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AA seq
539 aa
AA seq
DB search
MSANNNNPLKNSPFGHSIPPNPTTHLQSHTQSQTQRPSGSPFTNQFQVSQFAATHAQAIA
QAQSKVQAKAAAQAQANHAQFQAQLQAQGLAPSQSHGSLATNSPSFPSAIASTKRLPQKQ
IGRPPGVSNPNSISPMRTMEITPAPRNKKKQKLSGKQLQERVAAILPQSALYTQLLEFES
RVDAALMRKKIDIQEAIKNPPCIQKTLRIYVFNTFSNQIHTVPNKPHTEQPTWTMKIIGR
ILEEGMDPDQAGLISKPNPIYPKFSSFFKRVTISLDQRLYPDNHMIVWDSSRTPTPHEGF
EVKRKGDKEFMVNIRLEMNYTPEKFKLSDPLMEILGIEVDTRSRIIAAIWQYVKARKLQD
ADSPSYFNCDLPLQKIFGEEKMKFSNVSQKISTHLSPPQPIHLEHKIKLSGNNPAGNACY
DVVVDVPFPVQKELNALLANTEKTKEIEACNEAICSTVRKINEHRKGRAFFLGFSQSPVE
FIDALIESQGKDLKFLAGEVSRSDEKEHRADFYNQPWVEDAVIRYLNRKPATKPMEARN
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcgaacaacaataatccgctaaagaactctccttttggacattctataccacca
aaccctactacgcatctacagtcgcatacacagtcccaaactcaacgaccctctggatct
cccttcacgaatcaatttcaggtttcccagttcgctgcgacccatgcccaagccattgct
caagcccagtcaaaagttcaggctaaagctgctgctcaagctcaggccaaccatgcccaa
ttccaagcccagctccaagctcaagggctagcacctagccaatcccatggatctttggct
actaattcaccctcttttccatcagccattgcaagcacaaaacgactgcctcaaaaacaa
atcggaaggccacctggagtgtcaaatcctaattccatttctcccatgaggaccatggaa
attacaccagcccctcgtaacaaaaagaagcagaaactttcagggaaacagttacaagaa
agagtggcagcaattctcccacaatctgctctatacacgcagcttcttgagtttgagtcg
cgtgttgatgctgctttaatgagaaagaagatagacattcaagaagcgatcaaaaaccca
ccttgcattcagaaaacccttcgaatctatgtttttaacacattctctaatcaaattcat
acagttcccaataagccacacactgagcagcctacgtggacaatgaagataatagggaga
atattggaagagggaatggatcctgatcaagctggattgatttcaaagccaaaccccatt
tacccaaagttttcatctttcttcaaaagagttactatttcattggaccaaagactgtat
cctgataaccatatgatagtgtgggatagttctagaacaccaacacctcatgaagggttt
gaagtcaagagaaaaggcgataaagagttcatggtgaatatacgtttggaaatgaattac
acacctgaaaaatttaagctttcggatcctctaatggaaattcttggaattgaagttgat
acccgatcaagaattatagctgcaatatggcaatatgtcaaggctagaaagttacaggat
gcagattccccttcctattttaattgtgatctaccccttcaaaaaatattcggggaagaa
aaaatgaaattttccaatgtctcacagaagatttcaacccatctatccccaccacaacct
atacatttggaacataaaatcaagctatcaggaaacaatccagctggaaatgcatgttat
gatgtggtggtggatgtcccttttccagtacaaaaggaattgaatgctttgttggctaac
actgagaaaaccaaagagattgaagcttgtaatgaagcaatatgttcaacagtacgaaag
ataaacgagcatcgaaaaggacgagctttttttcttgggtttagtcaatcacccgttgaa
tttattgatgctttgattgaatctcaaggcaaagatctcaagtttcttgcaggggaagta
agtcgtagtgatgaaaaagagcatcgggctgatttctataaccaaccctgggttgaggat
gcagttattcgttacctaaatcgcaaaccagctacaaagcccatggaagcacgtaattaa
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