Lactuca sativa (garden lettuce): 111889564
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Entry
111889564 CDS
T05352
Name
(RefSeq) chromatin-remodeling ATPase INO80 isoform X1
KO
K11665
chromatin-remodeling ATPase INO80 [EC:5.6.2.-]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
111889564
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lsv03036
]
111889564
Chromosome and associated proteins [BR:
lsv03036
]
Eukaryotic type
Chromatin remodeling factors
INO80 complex
111889564
INO80 complex (yeast)
111889564
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
DBINO
Helicase_C
ResIII
DEAD
HDA2-3
Motif
Other DBs
NCBI-GeneID:
111889564
NCBI-ProteinID:
XP_023741476
LinkDB
All DBs
Position
5:329306958..329314003
Genome browser
AA seq
1460 aa
AA seq
DB search
MDSDRHIKNSYNYSNLFNLESLTKFQLPQGDEFDYYANSSQGESRGSRGGPMTDRSNGMM
LEKRKRRNTYSSDEDHEGSYDTYFSEEQYRAMLGEHVHKYKRRHKSNNLPASASTRNGMS
GMEIISHGSKDHKSLNGRSRGGHKEAGFAAEYNMERSISEPGYLDIGDGITYKIPPTYET
LATSLNLPRTSEIRVEEFYLTGTLDLGSLASMMSADKRLGPKSGSGMGEPRSQYESLWAR
LSSQTLNNSPLKFSLKVSDAALDSYSAPEGAAGGFRRSIMSESGVLQVHYVKVLEKGDTY
EIIERSLPKKQKEKKDPSMIEKEEMDRVDKYWVNMVRKEIPKHHRFFINFHRKQLTDAKR
FSETCQREVKMKVSRSLKLMRGASIRTRKLARDMLVFWKRVDKEMAEVRKREEKEAAEAL
KREQELREAKRQQQRLDFLLSQTELYGHFMQNKPTSQPPTEGDKVNESEVGEKEEDPEEA
EMKSEALKAAQDAVSKQKMITSAFDDEILKLRQASGTQDPEQQDSVAGSSNIDLLHPSTM
PVASSVQTPELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAE
EKNIWGPFLVVAPTSVLNNWADEIGRFCPDLKTLPYWGGIQERTVLRKNINPKRLYRRDA
GFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSATSIRWKTLLSFNCRNRLLLTGT
PIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLSRLHAILKPF
MLRRVKKDVVSELTRKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKKFMN
LMNIVIQLRKVCNHPELFERNEGTSYLYFGDIPNQLLPPPFGELEDIYYAGSKNPITYKV
PKLIYQEVVRNSDIFLLRGKHGINRESFEKHFNIFSPLHIHQSIFEQQDKNAPCNGSFGF
TRLIDMSPSETAFISNATLMERLLFSIARWDWCFSDEIMDDDDDDVEYNSIEKGKVRAVT
RMLLMPSKSERNVLKRRLATGPTDDPFEALVISHQDRLVSNVRLLHSAFSFIPQIRAPPI
DAECPDRDFAYRKAEELHNPWIKRLLLGFARTSESNGPNKPNDGAIHHLIQEIDSELPVV
QPALELTHKIFGSCPPMQSFDPAKMLTDSGKLQTLDILLKRLRAGNHRVLLFAQMTKMLN
IIEDYMNYRKYRYLRLDGSSTIMDRRDMVKDFQLRNDIFVFLLSTRAGGVGINLTAADTV
IFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILHRASQKSTVQQLVMTG
GHIQGDILAPEDVISLLIDDAQMEQKLKEIPAQVKDRQRRKGGTKAIRIDEEGDARLEDI
TDPEPPSDPFNTSPSEKPSSSKKLQRKGNTEKGPAKARGAQKGSKNPNSTTEDVQRQKPK
RPTKSVNENLEPAFTAVSQD
NT seq
4383 nt
NT seq
+upstream
nt +downstream
nt
atggactccgatcgccatatcaagaactcgtataactattcgaatctcttcaatcttgag
tctctgacgaaatttcaactacctcaaggtgatgagtttgattattatgccaatagtagt
cagggtgagagcagaggtagccgaggtggaccaatgactgacagaagtaacggaatgatg
ttggaaaagagaaagaggcgaaacacatacagcagtgatgaagaccatgaaggcagttat
gacacatacttctctgaagagcaatatagggcaatgcttggggagcatgttcataagtac
aaaagaaggcataaaagcaataacttgccagcttctgcttccacccgaaatggaatgtct
ggcatggagattattagtcatggatcaaaggaccataaatcattgaatgggcgctcaaga
gggggtcacaaagaagcaggttttgctgcagaatataacatggagaggtcaatttctgaa
cctggttatttggatattggggatggaatcacttacaagattcctccaacatatgaaaca
ttggctacctcattaaacttgcctagaacttcagagattcgagtggaggagttttatctc
acaggtacccttgatttggggtccttagcttcaatgatgtctgcagacaaaagacttggc
cccaaaagtggatcagggatgggtgagcctaggtcccaatatgagtctctttgggcaaga
ttaagttcccaaactttaaacaactcccctctgaagttcagtcttaaagtaagtgatgct
gcattagattcatattctgctcctgagggagcagctggtggttttaggcgttctatcatg
tcagaaagtggagtgctacaggtgcattatgtgaaggtcttagagaaaggtgacacgtat
gagattattgaacgtagtctacccaagaaacaaaaggagaagaaagatccatcaatgatt
gagaaagaggagatggatagagttgataaatattgggtgaacatggtcagaaaagagata
ccaaaacatcataggtttttcatcaactttcatagaaaacaattaaccgatgcaaagagg
ttttctgagacatgtcaaagagaggtaaaaatgaaagtgagcagatcacttaagttgatg
aggggtgcttcaattcgcacaaggaaacttgctagggatatgttggtgttttggaagaga
gtggataaagaaatggctgaggtgaggaaaagagaagaaaaagaagctgctgaagcattg
aaacgtgaacaggagcttcgtgaagccaaaaggcaacaacagaggctagatttcttgtta
tcccaaacagaactctatggccacttcatgcaaaacaagccaacttctcagccacctact
gaaggggacaaagttaatgaatcagaagttggtgaaaaagaagaagatcctgaagaggct
gaaatgaaatcagaagctttgaaagcagcacaagatgcagtctccaaacagaaaatgatc
acaagtgcattcgatgatgaaattttgaagttgcgtcaagcttcaggcactcaagaccct
gaacaacaagattcagttgctggatctagcaacatagatttgttgcatccatcaactatg
ccagtagcatcatcagtacaaacaccagagttgtttaaaggttctttaaaagagtatcag
cttaaaggtctccagtggcttgtgaattgttatgagcagggtctgaatggtattcttgct
gatgagatgggacttggaaagaccatccaagcaatggctttcttggctcatttggctgaa
gagaagaatatatgggggccatttctggttgttgctcctacttctgttttgaacaactgg
gctgatgaaattggacgattttgccctgacttaaaaacacttccttattggggaggtatt
caagaaagaacagtacttaggaaaaacatcaatccaaagcgtctttatcgtagggatgct
ggatttcacattctcattacaagctaccaacttctagtatcagatgagaagtatttcagg
cgtgtgaagtggcaatacatggtattggatgaagctcaggctatcaaaagtgcaaccagt
ataagatggaagacactactcagttttaattgtcggaatcgcctgcttctaaccggaaca
cctattcagaacaacatggctgagttgtgggcccttcttcatttcatcatgcctactcta
tttgatagccatgaacaatttaacgagtggttttctaaaggtattgaaaaccatgcagaa
catggtgggactttaaatgagcaccaacttagcagattgcatgcaattttgaagcctttt
atgttgcggcgagttaagaaggatgtggtatccgagttgactcggaagactgaagttaca
gtccattgcaaactgagttcacgacaacaagctttttaccaagctataaagaacaagata
tcacttgctgagttgtttgatagtaatcgggggcaactcaatgagaaaaagttcatgaac
ttaatgaacattgtcatccaattgagaaaggtttgcaatcatcctgaattatttgagaga
aatgaaggaacttcatatctctattttggagatatcccaaatcagcttcttccacctcca
tttggggaactggaggacatatactatgctggtagtaagaatcctattacatacaaggta
ccaaaattaatataccaagaagtggtgcgaaattcagatatctttttattaagaggaaag
catggcatcaatagagaatcttttgagaaacattttaacatattctccccgctacacatt
caccaatccatatttgagcaacaagacaaaaatgccccttgtaacggatcatttggattc
actcgattgattgacatgtcaccatcagaaacggctttcatatcaaatgctactttgatg
gagaggttattgttttctatcgcaagatgggattggtgcttttcagatgagataatggat
gatgatgatgatgatgttgagtacaatagtattgaaaagggaaaagtaagggcagttaca
agaatgctattaatgccatcaaagtcagaaagaaatgttcttaagagaagacttgcaacg
ggacccacagatgatccttttgaggcgttggtaatctcacatcaagatagacttgtatcc
aatgttcgccttcttcattcagccttttccttcattccacagataagggcacctcctatt
gatgcggagtgtccagatagagattttgcttacagaaaagctgaggaattacataatcca
tggattaagaggctgttgcttggatttgcacggacgtctgaatcaaatggacctaataag
ccaaatgatggtgctattcaccatttgatacaagaaatcgacagtgaactacctgttgta
cagcctgctcttgagcttactcacaagatctttggttcttgtccacctatgcaaagtttt
gatccagccaagatgctcacagactcagggaagcttcaaacacttgatatactgttgaag
cggttgcgtgcaggaaatcatcgtgttctcctgtttgctcaaatgaccaagatgttgaat
atcatcgaggactacatgaactacaggaagtacagatatttaaggcttgatggatcctct
accataatggatcgtcgggacatggtcaaagacttccagctacggaatgatatctttgta
ttcttgttgagtacaagagctggtggggtggggatcaatctgacagcggccgacacagtt
attttctatgaaagtgattggaatccaactcttgatttacaagccatggacagggctcat
cgcttgggtcaaaccaaagatgttacagtgtacaggttgatatgcaaagaaacggttgaa
gaaaagattttgcacagagcgagccagaaaagtacagttcagcaacttgtgatgactggt
ggtcacatacagggtgacattttagcccctgaagacgttatttctttactcattgatgat
gcacagatggagcagaagcttaaggaaattccagctcaggttaaagatcgacaaaggaga
aagggtgggacgaaagctataaggatagatgaagaaggtgatgcacgcctggaagacatt
acggatcctgaacctccatcagatccgttcaacacctctccttccgagaaaccaagctcg
tctaaaaagttgcagagaaaaggtaatacagagaaagggcctgcaaaagcaaggggggct
caaaaaggttcaaaaaacccaaattcaacaacggaggacgttcagcgccagaaacccaag
agaccaacaaagagtgtaaatgagaatcttgaacccgcatttacagctgtgtctcaagat
tag
DBGET
integrated database retrieval system
