Lactuca sativa (garden lettuce): 111889822
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Entry
111889822 CDS
T05352
Name
(RefSeq) protein ESSENTIAL FOR POTEXVIRUS ACCUMULATION 1 isoform X1
KO
K18730
PERQ amino acid-rich with GYF domain-containing protein
Organism
lsv
Lactuca sativa (garden lettuce)
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111889822
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
111889822
Surveillance factors
Other surveillance factors
111889822
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GYF
LYRM2-like
Motif
Other DBs
NCBI-GeneID:
111889822
NCBI-ProteinID:
XP_023741739
LinkDB
All DBs
Position
4:complement(2562284..2569514)
Genome browser
AA seq
1547 aa
AA seq
DB search
MAEGKLDLPDDLLSSKPSDHSWTSKVMTVDASGGNGEDKMIGYDSKDQAALDNSIPLSPQ
WLYSKPGDSKMEMRAPSSLSLGSSADSGLKEAWRADGSDDKKDWRKSGSETESGRRWREE
ERETGLLGSRRERRKTDRRADVASDNRAPSSDKWLDVGNRNSGNEARRDSKWSSRWGPDE
KEKEKEKEKRTTDAEKEDESHSQGNAGNNTRVVSERDPESRDKWRPRHRIMEASSGAFRA
APGFGVDKGRVEGSNSNSNSNPNMGFTVGRGRSSATVAVRPSSPGSIEGVPGKPPGVGDM
FFYPRGKLLDIYRTQRLDPSFGNMPEKIQEVPSITQVAALEPLAFVAPDAEEEAILGDIS
KGKLTGSELVASRSRVIGSSENITVVLDSTSTDGKDGTLLSGDNMIDQNQNDSRFDSQRF
KTREGQDANWDQEQEIPQMESYALQTRSNSSTIDQSHDKASNFDGVDLASMGHRPFNDVQ
PSSFDINSNLVDESNSVFVNPSSEQYWTRNMQDNTNEQLTSGIMPEELSLYYRDPQGEIQ
GPFLGVDIISWFEQGFFGADLPVRVADAPDEAPFMELGHVMPHLIPRHDYTTSNDPSPNL
DKSSDGFQGSLDASVSVPAPVSEMGFLSASDNPHWQLPEFNGLSGKHAQVRIPDHEGSLQ
HLYSEGQSFHDEEIVFPGRPGSSESASKFMNNHTVPSDLIEPGIQSSSENKMHPFGLLWS
ELEGSSLRNDQPSKTNLAGGIQQQFVNLPSQRASSFNTIPDADEWSDIYRRNAMDQQAND
FDLSEKLRSHQIQQQLLQQHNLLNSQHHLNESMLDHVSINPKQLAGQTGQGLDHLMALQL
QQQQRRIELHRQHQLQSHQLNQQQMLLKEQQSRQLLLEQLAQNQMRAAQAQSRADAARSN
NALDQILLKHQILNELHQRSQHVDPSSIEHLIQAKYGRQGQGQGHPNELLELIAHAKHGQ
MEHHMLQQEQFQGRQQLPLPLGLGLRQRMEMEEERRLGSVWPGPVDETTQFLRNAGGLHR
VNSSGLSPLDVYQQQQRLPSEELSHFERNLSMQERLQQSVYERSLRMPGGGPAMNLDVNS
MGRVNQNMQEFNAPLHHGGVANQHPLASNCFHPSSQMGVGAEGAWSESNNGIGHGHGQMP
NEWMESRIQQQQPHIDNGRQKEVRRISEDPSVWMSAGSNDDPSKRLLMELLQQSQNPPEI
QSSSTEETLALDVSNNHNNNNNMVRFENRDYFRTNSNRSMNQDVGLNHPSFAGASYGSNS
GNTSQGLLVDETIIGLHTTRSSSGAMASPFFSDINESSDNMAAIERGFFDIEGNRRLLKT
EGKGVEEEIIFQQGDHGEMPNNVGRHTSAAAVFAGQGGNKNLYNEKIAGEAKDSSRGMVP
TSKRSTPDNILVGRASSSSLSSHEGLCEVASRGRDGHSLDEAGGGGRENMLMGGKNKKEE
GRFRRTSSSSSLSLSLSDAGDVLETASFSDMLKSNHNNTSNNNKKPPLAAADPAAEATAE
GHNSKTGAGAGGGKKKGKKGRQIDPALLGFKVTSNRIMMGEIQRIQD
NT seq
4644 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaggcaagcttgatcttcccgatgatcttctctcctccaagccctctgatcat
tcttggacctctaaagtcatgacagtggacgcttctggagggaatggtgaagacaagatg
atcggttatgattccaaagatcaagcagctttggacaacagcattcccctgtctcctcag
tggctttattctaaaccaggcgatagtaagatggaaatgcgggcaccaagttctctctcc
cttgggagttctgctgactcgggtttgaaggaggcttggcgtgcggatggatctgatgac
aagaaagattggaggaagtctggaagtgagacagaaagcgggcgtcgctggcgtgaagaa
gaaagagaaacaggattacttggcagcagaagagagcgcaggaaaaccgatcgccgtgct
gatgtggcgtctgataacagagctccttcctctgacaagtggcttgatgtgggtaaccgt
aattctgggaacgaggcaaggcgtgatagcaaatggtcatccagatggggcccagatgag
aaagaaaaggagaaggagaaggagaagaggacaacagatgcagagaaggaagatgagtct
cactctcaaggaaatgcaggcaacaacactagagtggtctctgagcgtgatcccgaatca
cgtgataaatggaggccacgacatagaataatggaggcaagttctggtgcctttcgtgct
gcacctggatttggggttgacaaaggaagggttgagggatcaaactcaaactcaaactca
aaccctaacatggggtttactgttggacgtggcagatctagtgctactgttgctgtaagg
ccttcatctccaggttccatcgagggtgtgcctggaaagcctcctggggttggggatatg
tttttctacccaaggggaaagcttcttgatatataccgtacacagagacttgacccttct
tttggtaacatgcctgaaaagattcaggaagtaccttctattactcaagtagctgcactg
gaacctcttgcttttgttgctcctgatgcagaagaggaggccatccttggtgatatttcc
aagggaaaactcactggtagtgagttggtggccagcaggtcgagagttatcgggtcatct
gagaacattacagttgtcttggattcaacatccactgacgggaaagatggtactctactc
tcgggagacaatatgattgaccaaaatcaaaatgattcacgctttgatagtcaaagattt
aaaacaagagaggggcaagatgctaattgggatcaagagcaagaaatccctcagatggaa
tcatatgcactgcaaacacggtcaaacagcagtactattgaccagagtcatgataaagct
tctaattttgacggcgtagatttggcttctatggggcatcggccgtttaatgatgtccag
ccatcttcatttgatatcaattcaaatcttgttgatgaatcgaactctgtatttgttaat
ccatcttctgagcaatattggacaagaaatatgcaggataatacaaatgaacaattaaca
agtggcatcatgcctgaggagttaagtctttactatcgtgatcctcaaggggagatccag
gggccatttcttggagtagacatcatttcatggtttgagcaaggatttttcggggcagat
ttgccagttcgagtggcagatgcaccagatgaagctcctttcatggaattaggtcatgtt
atgccacacttgattcccaggcatgattacaccaccagcaatgatccaagtcccaacttg
gacaagtcatctgatggtttccaagggagcctggatgctagtgtttcagttcctgctcct
gtttctgaaatgggctttttgtctgcctcagataatccacattggcaattgcctgagttc
aatggtttgtcaggaaagcatgctcaagtcagaatacctgaccatgaaggctctttgcag
catttatactctgagggtcaaagcttccatgatgaagaaattgttttcccaggaagacct
ggcagcagcgagtctgcatcaaaatttatgaacaaccacactgttccatctgatttaatc
gaacctggcatacagagtagtagcgagaataagatgcacccttttggattgttatggtct
gagctagaagggtcgagtttgagaaatgatcagccatctaagacaaacttggctggtggt
atccagcagcaatttgtgaatttaccaagtcagagggcctcttctttcaacacaatacct
gatgctgatgaatggtcagatatttatagaagaaatgccatggatcaacaggccaatgac
tttgatttatcggaaaaacttaggtctcaccaaattcaacaacagctgctccaacagcat
aatctgctcaactctcaacatcacttgaatgaatcaatgctggaccatgtttctataaac
ccaaaacagttggctggacaaactgggcaaggtcttgatcacctaatggcactacagttg
cagcagcagcagaggcggattgagcttcatcggcagcatcaattacagtcgcatcagttg
aatcaacagcaaatgctgctcaaggaacagcaatcacggcagttacttcttgaacagttg
gcccaaaatcagatgcgtgcagcacaagcacaatcacgtgcggatgctgcaagatcaaat
aatgcactcgatcagattcttctcaagcatcagatcttgaatgaacttcaccagcgttca
cagcatgtcgatccatcatcaatagagcatctgattcaagcaaagtatggtcgtcaaggt
caaggtcaaggacatccaaacgagctgttggagctcattgcacatgcgaagcatggccag
atggaacatcatatgcttcagcaggagcagtttcagggaaggcagcagctgcctttgcct
ttgggtttgggtttaaggcagaggatggagatggaagaagagaggcgtcttggttctgtc
tggcctgggccggttgatgaaaccactcagtttctaagaaatgctggtgggcttcaccgg
gtcaactccagtggcctcagtcctttagatgtttatcagcaacaacagagactgccttca
gaggagttgagtcattttgagaggaatctttcaatgcaagagagacttcagcagagtgtt
tatgaacgctcgttacgtatgccaggtggtggtcctgcaatgaaccttgatgttaattcc
atgggtcgagttaatcagaatatgcaggagttcaatgctccattgcaccacggtggtgtt
gctaatcagcatccgttagcctcgaactgcttccatccctcctctcaaatgggtgtgggt
gcagagggagcctggtctgaaagcaataatgggattgggcatgggcatgggcaaatgcca
aacgagtggatggagtcgaggattcaacaacagcagccgcatattgataatggaaggcag
aaggaagtgagaaggatttctgaagatccgagtgtttggatgtctgctggaagcaatgat
gacccttcaaagaggttgcttatggaactgcttcaacagagtcagaaccccccagagatt
caatcatcttctactgaagaaacattagcattggatgtgagtaataatcataataataat
aataatatggtacgattcgagaatagggattattttaggaccaactccaatcgttccatg
aatcaagacgttgggcttaatcacccctcatttgctggtgcgtcttatggctctaactca
ggcaacacatcacaaggactgctggtggatgagacaataattggtttgcatactactaga
tctagttcaggagcaatggcaagtccattcttttctgacattaatgaatcctctgacaac
atggcggccatagaacgaggcttttttgatatagagggaaacagaagattacttaaaacc
gaaggtaagggtgtagaagaagaaataatatttcagcagggtgaccatggggaaatgcca
aataatgttggaaggcacactagtgctgctgctgtctttgcaggtcaaggtgggaataaa
aacttgtacaatgagaagattgcaggagaggctaaagacagcagcagggggatggtgcct
acatcaaagaggtctactcctgataatatcttggtgggacgtgcatcatcatcatcctta
tcatcccatgaagggttatgtgaggtggcttctagaggaagagatggccatagccttgat
gaagcaggtggaggtggaagagaaaacatgttaatgggtggaaagaataagaaagaggag
ggtcgattcaggagaacatcatcatcatcatcattatcattatcactgagcgatgctggt
gatgtgttagagacggcatctttcagtgatatgcttaaaagcaatcataacaatactagt
aataataataagaagccccccttggcagcagcagatccagcagcagaggctacagcagag
ggacataatagcaaaactggtgctggtgctggcggtgggaaaaagaaaggcaaaaagggg
aggcagatcgacccggctctgcttggttttaaggttaccagcaaccgcattatgatggga
gagatccaacgcattcaagattga
DBGET
integrated database retrieval system
