Lactuca sativa (garden lettuce): 111890120
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Entry
111890120 CDS
T05352
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 11
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
lsv
Lactuca sativa (garden lettuce)
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111890120
03041 Spliceosome [BR:
lsv03041
]
111890120
03036 Chromosome and associated proteins [BR:
lsv03036
]
111890120
Enzymes [BR:
lsv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111890120
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
111890120
mRNA cycle factors
Common to processing body (P body) and stress granule
111890120
Spliceosome [BR:
lsv03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
111890120
Chromosome and associated proteins [BR:
lsv03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
111890120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
111890120
NCBI-ProteinID:
XP_023742039
LinkDB
All DBs
Position
6:complement(76761037..76766008)
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AA seq
637 aa
AA seq
DB search
MPTSWADSVAAAENAAAGSYVGNSNSLAPNRSTYVPPHLRNRPGSAEAAPPPATANTGST
SAVPVVGGGAPNRWAAPVPGPRNDFRSGYGGGGGGGRGGGGGWNNRSGGWDRGRDREVNP
FGDEENTTSEQDFLEQENTGINFDAYEDIPVETSGDNVPPPVNTFAEIDLGEALNLNIRR
CKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMRGQFGQRAPRMPRT
ACPLALILSPTRELSCQIHEEARKFAYQTGVKVVVAYGGAPINQQLRELERGVDILVATP
GRLVDLLERARVSLQFIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSAT
FPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGTH
GKQALTLVFVETKKGADSLEYWLCMNGFPATTIHGDRTQQEREQALRSFKSGNTPILVAT
DVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDNNSSMARPLSD
LMQEANQEVPAWLARYAARASYGGGKNRRGGGGRFGGRDFRRDSNFNRGGGGDYYGGGGG
GNMNSYGGAYGGGYGGGGGGYGGGGGGYNPGVASAWD
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgccaacttcttgggctgattcagttgctgcagctgaaaacgcggctgctggttcatat
gtagggaattcaaattctttagccccaaaccgatcaacctatgttcctccacatctccgt
aacagacctggtagcgcagaggcggcaccaccaccagccaccgccaacactggctctact
tctgctgtacccgttgttggtgggggagcccccaaccgttgggctgctcctgttcctggt
cctagaaacgacttcaggtcagggtacggtggtggtggtggcggtggacgtggcggcggc
ggcggttggaacaacaggagtggtggctgggaccgtggaagagaccgtgaagttaaccct
tttggagatgaagaaaacactactagtgaacaagacttcttagaacaggagaacactgga
atcaactttgatgcttatgaagatattccagtggagacaagtggtgataatgtcccacct
cctgtgaacacttttgctgagattgatttaggggaagctttaaatttaaacattaggagg
tgcaagtatgtgaagccaactcctgttcaaagacatgccattccaatctctcttggtgga
agggatttaatggcttgtgctcaaacagggtcaggaaagacagctgctttttgttttcca
atcatcagtgggataatgagagggcaatttggtcaaagagctccacgaatgccacgtaca
gcatgtccacttgctcttattctctcccctacacgggaactatcatgtcaaattcatgaa
gaagctaggaagtttgcttatcaaactggagtaaaagttgtggttgcttatggtggtgcc
ccaataaatcaacagcttcgagagctagagaggggcgttgacattcttgttgctacccct
gggagattggttgaccttctagaaagggcaagagtgtcattacagtttatcagatattta
gctttggatgaagctgatagaatgcttgatatgggattcgaaccacaaatcaggaaaatt
gtccaacaaatggacatgcccccgccaggtgtcagacaaacaatgcttttcagtgccact
ttccccaaagagattcagagattggcttctgattttcttgcaaactacatatttttggct
gtgggaagagttggatcaagtactgatttgattgtgcaaagagttgaatatgtacaagaa
agtgacaaaagaagccatcttatggaccttcttcatgcccaaagggccaatggtactcat
ggaaagcaagctcttacattggtatttgtggagacaaaaaaaggagctgattcattggaa
tattggttatgcatgaatggcttccctgcaaccactattcatggtgatagaacacaacag
gaacgcgaacaagcattaagatcattcaaaagcggaaacacaccaatcctagtggcaaca
gacgtagcagcacgtggactcgacatcccacacgtggcccacgtggtcaactttgacctc
ccaaacgacatcgacgattacgtccaccgaatcggaagaaccggccgcgccggaaaatcc
ggtctcgccaccgccttcttcaacgacaacaactcctccatggcccgccccctctccgac
ctcatgcaagaagccaaccaagaagtccccgcctggctcgctcgctacgccgcccgcgct
tcctacggcggcggcaagaaccgccgcggtggcggtggccgcttcggcggtcgcgatttc
cggcgagactccaatttcaaccgcggcggtggtggagattattatggcggcggaggcggc
gggaacatgaacagctacggtggagcttatggtggcggatatggtggcggcggcggcggg
tatggtggtggtggtggtggttataatcccggtgttgcgagtgcttgggattaa
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