Lactuca sativa (garden lettuce): 111890729
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Entry
111890729 CDS
T05352
Symbol
LOC111890729
Name
(RefSeq) serine/arginine-rich splicing factor SR30 isoform X1
KO
K12890
serine/arginine-rich splicing factor 1
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111890729 (LOC111890729)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsv03041
]
111890729 (LOC111890729)
Spliceosome [BR:
lsv03041
]
Common components
Common spliceosomal components
SR proteins
111890729 (LOC111890729)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
RRM_YTH1
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
111890729
NCBI-ProteinID:
XP_023742581
LinkDB
All DBs
Position
5:309629833..309633162
Genome browser
AA seq
266 aa
AA seq
DB search
MGRSSRTLYVGNLPGDIREREIEDLFYKYGPIVEIDLKIPPRPPVFAFVEFEDPRDAEDA
IRGRDGYKFDGQRLRVELAHGGRSSSSIDRHRSGGGSHGGVSRRTDYRVYVTGLPSSASW
QDLKDHMRRAGDVCFSQVFRDRDGMRGIVDYTNYDDMKYAVRKLDDSLFRNHFSKAYIRV
EEYDRRHNESRSRTPSPYYSRSRSPTHSYSSDSRSRSRSRSVSYRSKSASRSPSRSPTPS
STHRHGGDRSPSRSRSGSRSPSVRSD
NT seq
801 nt
NT seq
+upstream
nt +downstream
nt
atgggtcgctcaagtcgtacactctatgtgggtaatcttcctggtgatattcgcgaaaga
gaaattgaagatctgttttacaagtatggacccattgttgaaatcgacctgaaaattcct
cctagaccccctgtttttgcctttgtagagtttgaagatccgcgtgatgctgaagatgcg
atccgtggacgtgatggctataagtttgatggtcaacgcttacgagttgaacttgcacat
ggtgggagatcttcatcttccatagatcgccacagaagtggaggtggtagccatggggga
gtatcaaggcgcactgactatcgtgtttatgtgactggattaccatcttctgcttcatgg
caagatctgaaggatcacatgcgtagagctggtgatgtttgtttctctcaagttttccgt
gatcgtgatggaatgagggggattgtggactatacaaactatgatgatatgaaatatgcg
gtaaggaaacttgatgactcactttttcggaaccacttctccaaggcctacatacgggtg
gaggagtatgatagaagacacaacgagtctaggagccgaaccccaagtccatattattca
agaagcagaagtccaactcacagctacagctctgacagcagaagcaggtctcgatctaga
tctgtttcttatcgatctaaatctgcttcaagatctccatcaagatcgcctacaccatca
tctactcatcgccatggtggagataggagcccaagtcgaagcagatctggttctcgttca
ccatcggtgagatctgattag
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