Lactuca sativa (garden lettuce): 111890809
Help
Entry
111890809 CDS
T05352
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 2 homolog B isoform X2
KO
K08775
breast cancer 2 susceptibility protein
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03440
Homologous recombination
lsv03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
111890809
03460 Fanconi anemia pathway
111890809
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lsv04121
]
111890809
03036 Chromosome and associated proteins [BR:
lsv03036
]
111890809
03400 DNA repair and recombination proteins [BR:
lsv03400
]
111890809
Ubiquitin system [BR:
lsv04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
111890809
Chromosome and associated proteins [BR:
lsv03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
111890809
DNA repair and recombination proteins [BR:
lsv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
111890809
FA (Fanconi anemia) pathway
Downstream FA components
111890809
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA2
BRCA-2_OB1
BRCA-2_helical
BRCA2DBD_OB2
Motif
Other DBs
NCBI-GeneID:
111890809
NCBI-ProteinID:
XP_023742661
LinkDB
All DBs
Position
5:complement(311497651..311503849)
Genome browser
AA seq
1383 aa
AA seq
DB search
MSTWQIFSDAGNSFRWQCSHVKLSSEPQKALIQKPSSPHHLPSIADLLVQGFSKLYEDQN
DEIETPPSFQTGLRKPVVVKQSSLVKASSILGDHDDEVTVLPKSNQSGEIETPPTFRTGL
GKPVVVKQSSLVKASSILGEQDDGATVLSKSGYSKLYKNKSGEIDTPPSFRTGLGKPVVV
KQSSLVQASAILGDQDDGATVGYSKLHENQSGETETPPTFRTGLGKPVVVKQSSLVKASS
ILGDEDDRDIFPFKSGYSKLHENQNSEIETPPTFRTGLGKPVVIKQSSLMKASTIFGDED
DGAIVSSKSGYSKLHGNQSDEVKTPPSVLTGFGKPVVVKQSSSLKASYVLGDQNGGASVL
SKSGYSNPYGNQSDEVETPPAFRTGLGKLVAVKQSSLVKASSILGDQDDGAIADTGLVNR
EENSKIGGTPFTFRTGSGKSVAIKQSSMAKALSMFGCQDDDAFVDTGRDDGTSCSNSMFQ
TGSGKAVNICSTGLMKARTLLGLEENSDHNEVSKGLEHANTGEIREVARGSILSSSRPPP
IKFQTAGGRSVKVYGDALKRARSLLGDPDVGNLLKEGDACYPAFSSNKKLGNNMLNKENN
VCNSFSDGIPNAKQKSNNFIFPVKSVLSDKKTVSRLENIGLRSNLIKEFDAAEHDITTKE
YNNHIPLVDISNTIGLNGTGEKRKPSSRIYPSPFKKPRNSKFVPPLNKKSTFIPPLNKSS
TVVSNGTMPKMPEGSCCKKKVSTRYPFQFPRKYIKEYFVEPPYNMFENIPEWLRKINPEN
ADKHMFEDECGLKCIGVDTFCHMLTQSGCSALSKEWIANHYRWIIWKLACYERCYPAKFS
GKLLTVSNVVEELKYRYEREYNNGHRSALKRILEGDAPPSSHLVLCIASIKLKCNEEQDA
EAPSTSNIELTDGWYSVKGLLDDLLLKQLLAGKLFVGQKLRICGAGLSGWNAPVSPLEAS
SMISLCLHMNGTYKAHWAERLGFCKSGCVPLALKCIKGSGGVVPSTLVGVTRIYPVLYRE
RLSEGGFVVRSERMESKRMQLYDYRRSSIVEGVMSEFERGSKSFETDDDDEGERISHLLE
KAAEPEVLMAEMTSEQLTSFASYQAKIEASRQSEMQKSIKKALDEAGLSRNEVNTLMRVR
VVGLTSKIHNHKASPQPQQALITIWNPTEKQQSELVEGQAYTVSGLTPINSDSCTIYMRA
SGSTNKWRLLSPSSTQHFLPFFSPRKPVLLSEMGEVGISSEFDVAAFVVYVGEVHKFGDE
KRQWVFVTDGTTTTHDLSLSDSLLAISFFSPSVDCDSIVPINYNLVGSTVGFCNLIKRAK
DQMNRIWVADATENSTYFLSYDGGNSKHLKDAAASADRWAKAKASTLIIEKLKGKISSMV
ARN
NT seq
4152 nt
NT seq
+upstream
nt +downstream
nt
atgtctacgtggcaaatcttctcagacgccgggaatagtttccggtggcaatgctcccac
gtcaagctctcaagtgaaccacaaaaagccctaattcagaaacctagctctcctcaccat
cttccatctatcgccgatctcttggttcaaggattctcaaagctatacgaggatcaaaat
gatgaaattgagacccctccttctttccaaactggattgaggaaaccggttgttgtgaag
caatcttccttggtaaaagcatcatctattcttggagatcacgatgatgaagtcactgtt
cttcccaaatcaaatcaaagtggtgagattgagacccctccgactttccgaactggattg
gggaaaccggttgttgtgaagcaatcttccttggtgaaagcatcatctattcttggagag
caagatgatggagccactgttctttctaaatcaggatattcaaagctgtacaagaataaa
agtggtgagattgatacccctccttctttccgaactggattggggaaaccagttgttgtg
aaacaatcttccttggtgcaagcatcagccattcttggagatcaagatgatggagccact
gttggatattcaaagctacatgagaatcaaagtggtgaaactgagacccctccgactttc
cgaactggattggggaaaccagttgttgtaaagcaatcttccttggtgaaagcttcatcc
attcttggagatgaagatgatagagacatttttcctttcaaatcaggatattcaaagcta
catgagaatcaaaatagtgaaatcgaaacccctccaactttccgaaccggattggggaaa
ccggttgttataaagcaatcatcattgatgaaagcatcaaccatttttggagatgaagat
gatggagccattgtttcttccaaatcaggatactcaaagctacatggaaatcaaagtgat
gaagttaagacccctccgtctgtcctaactggatttgggaaaccagttgttgtgaagcaa
tcttcctcattgaaagcatcatatgttcttggagatcaaaatggtggagcctctgttctt
tccaaatcaggatattcaaatccatatgggaatcaaagtgatgaagttgaaacccctcca
gctttccgaactggattggggaaattggttgctgtgaagcaatcttccttggtgaaagca
tcatctattcttggagatcaagatgatggagccattgcagatacaggattggtaaaccga
gaggaaaattcaaaaataggtggcacccccttcacatttcgtactggatctgggaaatca
gttgctataaagcagtcttccatggcaaaagcactatctatgtttggatgccaagatgat
gatgcatttgtagacacaggtcgagatgatggaaccagttgctcgaattccatgttccaa
acagggtcagggaaagctgtaaacatatgctcaacaggtcttatgaaagcaagaacattg
ttaggattggaagaaaattctgatcataatgaggtttctaaaggccttgaacatgcgaat
acaggtgaaatcagggaggttgctcgagggtctattctttcttcttctagaccaccacct
atcaagtttcaaacagctggtggaagatctgtgaaagtttatggtgatgcattgaaacga
gcaaggagccttctaggagatcctgatgtagggaatttgttaaaggaaggggatgcatgt
tatcctgcattttcatctaataagaaattggggaataacatgttgaacaaagaaaataat
gtgtgtaattcttttagtgatggcataccaaacgcaaagcaaaagtctaataacttcata
ttccctgtaaaatcagttttatctgataagaagactgtatccaggttagaaaatataggt
ttgagaagtaatttgatcaaagaatttgatgcagctgaacatgatatcactaccaaggag
tataataatcatatccctttggtggatatttcaaatactattggtttgaatggaactgga
gaaaagaggaaaccatcaagtcgaatatatccatctccattcaagaagccgcgaaattcc
aaattcgtccctccattgaacaaaaagtcaacattcatccctccattgaacaaaagctca
acagtagtctctaatggtacaatgcccaaaatgcctgaaggatcatgctgcaaaaaaaag
gtttccactcgatacccttttcagtttcctcgcaagtacatcaaggaatactttgtagag
cctccatataatatgtttgagaacatacctgaatggttaagaaagataaacccagaaaat
gcagacaaacacatgtttgaagatgaatgtggtttaaaatgcattggtgtggataccttc
tgtcacatgttgactcaatcaggatgttcagctctttcaaaagagtggattgcaaatcac
tacagatggataatctggaaacttgcatgctatgagagatgttatcctgctaaattttct
gggaaacttttgactgtttccaatgtggtagaggaattgaaatatagatatgaaagagaa
tataacaatggtcacagatcagctctgaagagaattctagagggagatgctcctccttct
tcccatttggtactttgcatagcatctataaagttaaagtgtaatgaagaacaagatgca
gaggctccttctacatcaaatatagaactaacagatggatggtactcagtgaaaggtctc
ttggatgatttacttttaaagcaacttcttgctggaaaattgtttgttggacaaaaacta
aggatttgtggagctggtttaagcggttggaatgcacctgtttcaccccttgaggcatca
agtatgattagcttatgcttgcacatgaatgggacatataaagctcattgggctgaacgc
ttggggttctgtaaaagtggttgtgttccattagcccttaaatgcattaaaggttctgga
ggtgtagttcccagcacattagttggagtcacacgtatataccctgttctatacagggaa
aggttaagtgagggaggctttgtggtgagatcagagaggatggaaagcaaaagaatgcaa
ctgtatgactacagacgttcaagcattgtggagggggttatgtcggagtttgaaagagga
tccaaaagttttgaaactgatgatgatgatgaaggggagaggatttcacatctactagaa
aaagctgcagaaccagaagttttaatggctgagatgacttcagaacaactcacttccttt
gcttcttatcaagcaaaaatcgaggcaagtagacaatcagagatgcagaaatcaatcaaa
aaggcattagatgaagctggattaagtaggaatgaagtgaacacgcttatgagggttaga
gtcgttggtttaactagtaaaattcacaatcacaaggcatccccacaaccacaacaagcc
ttgataacaatatggaacccaactgagaaacagcaatcagagttggtggaggggcaagca
tatactgtttcaggtcttacaccgattaactctgattcatgtactatttatatgcgtgca
agtggatctacaaacaaatggcgtctgttatctccatcatcaactcaacactttctgccg
ttttttagtcctcgaaaaccggtgttgttatcggaaatgggtgaagttggaatttcgagt
gaatttgatgttgctgcatttgtggtgtatgtgggtgaggtgcataagtttggtgatgag
aagaggcaatgggtttttgtaacagatggcactaccactacacatgacctctctctctcg
gattcattgcttgcaatcagtttcttttcaccatctgttgactgtgattccattgtacct
atcaactacaaccttgtaggatcaacggttgggttttgtaatctgataaagagggccaag
gaccaaatgaatcgtatatgggtggctgacgccactgaaaactctacttactttttaagt
tatgatggtgggaattcaaaacacttgaaggatgcagctgcttctgctgatcgatgggcg
aaagcaaaagcctctactctgataattgagaagctaaagggaaaaatatcgtctatggtt
gctagaaactag
DBGET
integrated database retrieval system
