Lactuca sativa (garden lettuce): 111890906
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Entry
111890906 CDS
T05352
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111890906
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsv03021
]
111890906
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111890906
Transcription machinery [BR:
lsv03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111890906
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
111890906
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
111890906
NCBI-ProteinID:
XP_023742741
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All DBs
Position
7:22058548..22063730
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AA seq
883 aa
AA seq
DB search
MEGASFLSSRSIGYRPAPNDSVVGLPSNSSQKSLTPILDRFKLLLKEREEEIRVSSGGDD
DIEIPLLSTEEIVELYEVVLSELVINSKPIITDLTIIAGEQREHGAGIADAICARIIEVP
VEQKLPSLYLLDSIVKNIGRDYVRHFSARLPEVYCAAYRQVHPSLHPSMRHLFGTWSTVF
PASVLRKIESQLQFSPSPSYQSSGLKDAESPKPAHGIHVNPKYLEARRQLESSSTDTKLQ
HARPISTPKILGQPSTAFDEYETDNGQSIGSTSQLGHTPFGHGHTRPPSPALEDFPMIDS
PKRVVEVASPSPSHHGYGYRPPSGSGSGTHGVAVSNGFDVQRPRALISAYGTDERNKMIN
QNHQHGKNLNTNGLGSKGGVLTWQNAEEEEFEWEDMSPTLAGSSKRGQMVGPNRTGFGRG
DWSSQERVPSVASNNAVSLSDRGLKRKMTGFQNEASDIPVSRYSQEPLNLSHEQQWAPQH
HYNPRGQRPPLIDTYPIPNPQHHLSSAPRLNLSSPGIMNPELSIPTSKPAWRPSIPFQKH
VRSPFDMLNPSNSVNDNTSFLHNQPFDGSETQLLPKLRNQQFQTQIEVRPPALGFNPSHL
TARPMIRGYTPQRFDSNHSMNPVPGMQSSIPFHLHGVGLPPLPPGPPPLHQPLPSNTSIP
PAGGALSGLFSSLMAQGLLSLTKPTPEQDSVGLEFDPDVLKTRHESAITALYTDLPRQCK
TCGLRFKSQEEHSNHMDWHVTKNRVSKNRKQKPSQKWFANVSVWLSSAEALGTDPVPGFL
IPSENVIEKKDDDDVAVPADEDQNACALCGEPFDDFYSDETEEWMYRGAVYMNGQSGSTV
GMDRSQLGPIVHAKCRSESTVGPPDDSGSNGRGLMEEGMRHVG
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atggagggtgcgagttttctgagtagtagaagtatcggttacagaccagcaccgaatgat
tccgtcgtggggttgccgagcaacagtagtcagaagtcgctaactccgattcttgatcgt
ttcaagcttttgttgaaggaaagagaggaagaaattagggtttctagcgggggagacgat
gatattgaaattccactgcttagtactgaagagattgtagagttatatgaagttgtttta
tcggagttggttattaattcgaagccaattattactgatctcacgataatcgctggggaa
cagagagaacatggtgcgggcattgctgacgcaatttgtgctcgaattatcgaggttcca
gttgagcaaaaactcccttctttatatcttctggatagtattgtcaaaaatattggcaga
gattatgtgagacacttttctgcacgcttgcctgaggtttattgtgcagcatacagacaa
gtgcacccaagtctgcatccttccatgcgccatctttttggtacatggtcaacagtattc
ccagcttccgttcttcgaaagattgaatctcaattacagttttccccttcaccaagttat
caatcttctggtttaaaagatgctgaatccccaaaaccagctcatggtatacatgtcaat
ccaaagtacttggaggcaagacgtcagcttgaaagttcatctacagatactaaacttcaa
catgcaagaccaatttcaactccaaagattcttggacagccttcaactgcattcgatgaa
tatgagactgataatggacagtcaatagggtcaactagtcaactaggtcatactccattt
ggtcatggtcatacaagacctccatcaccagctcttgaagattttcccatgattgattcc
cctaaaagagtggttgaagttgcatcaccatcaccatcacatcatggctatggttataga
ccacctagtggcagtggcagtggcacacatggtgtagctgtaagtaatggatttgatgtt
caaagaccaagggctttgattagtgcttatgggacagatgagagaaacaaaatgattaat
cagaatcatcaacatgggaaaaatttaaacacaaatggattaggtagtaaaggtggtgtg
ctgacttggcagaatgctgaagaagaggagtttgagtgggaagacatgagtcctactttg
gcaggtagctctaaaaggggacaaatggtgggacccaatcggaccggttttggtagaggc
gattggtctagccaggagcgggtcccatcggttgcctccaacaatgcggtttcattgtct
gatcgtggattaaagcgaaaaatgactggattccaaaacgaggcttcagatattccagtt
tctcgttactctcaagaaccattaaatctttctcacgaacagcagtgggcccctcagcat
cattacaatccacgggggcaaaggccccctctcattgatacctatccaatccccaatcca
cagcatcacttgtcctcagctcccagattgaatctatcaagccccggaatcatgaatccg
gagttgtcaattccaacttcaaaaccagcctggcgtccatctattccgtttcagaaacac
gtcaggagtccatttgacatgttgaatccttccaattcggtaaatgataacacatcattt
ttgcataatcagccgtttgatggcagtgaaacccagctactacccaaactccggaatcag
caattccaaactcagatagaggttcggccacctgctttggggtttaacccatctcatcta
acagcacgacccatgattcgtgggtataccccacaacgatttgattccaatcattccatg
aatccggtccctggaatgcaatcatcaattccattccatttgcatggtgtagggttgcca
cctttacccccaggaccccctccacttcatcaaccccttccatcaaacacctcaatacct
ccagctggcggtgcactttctggtttattcagttctctgatggcccaagggctgctctca
ctcactaaaccaactcctgaacaggattccgtgggactcgaattcgatcccgatgttcta
aaaacccgccacgagtccgcaataaccgcattatacaccgatcttccaagacaatgcaaa
acatgtgggctccgcttcaaatcacaagaagaacacagtaaccacatggactggcacgta
acaaaaaaccgcgtgtcaaaaaaccgtaaacaaaaaccctctcaaaaatggtttgcaaat
gtcagcgtatggctcagcagtgcagaagcattagggaccgatccggtccccggatttcta
attccatctgaaaatgtaattgaaaagaaagatgatgatgacgtggcggtccctgctgac
gaggatcagaatgcttgtgcgttatgtggcgagccgtttgatgatttttacagcgatgaa
acggaagaatggatgtatagaggtgcggtttatatgaatggtcaaagtgggtcaactgtg
ggtatggataggtctcaattgggccccattgttcatgctaaatgtagatccgagtctact
gtgggcccgcctgatgattctggaagtaatggacggggattaatggaagaagggatgcgg
catgttggatga
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