Lactuca sativa (garden lettuce): 111890907
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Entry
111890907 CDS
T05352
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv04120
Ubiquitin mediated proteolysis
lsv04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
111890907
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
111890907
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lsv04121
]
111890907
Enzymes [BR:
lsv01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
111890907
Ubiquitin system [BR:
lsv04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
111890907
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
111890907
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_EIPR1
zf-C3HC4_2
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_WDR90_POC16_2nd
zf-C3HC4
WD40_MABP1-WDR62_1st
Beta-prop_HPS5
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_EML
zf-C3HC4_3
WD40_like
zf-RING_2
zf-RING_UBOX
zf-C3HC4_4
WD40_RFWD3
Beta-prop_WDR75_1st
Beta-prop_DCAF12
Beta-prop_WDR35_TULP_N
zf-RING_5
Beta-prop_IFT140_1st
Beta-prop_SCAP
zf-RING_10
RING_XB3-XBAT31
U-box
zf-Nse
Prok-RING_4
DUF4349
zf-RING_6
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
111890907
NCBI-ProteinID:
XP_023742742
LinkDB
All DBs
Position
7:complement(18614397..18619542)
Genome browser
AA seq
708 aa
AA seq
DB search
MGGGGGSIGGAIVPSVKSGLPAPSSELPAPAPIPPPPVYQLHPPQVPASDRAVVEAEVRE
DDREAEETDKDLLCPICMQIIKDAFLTSCGHSFCYLCIVTHLQNKSDCPSCASYLTTNQI
FPNFLLNKLLIKASASHIAKHASPTEQLRQALQQGCNVSVKEVDILLVLLAEKKRKMEQE
EAETNLQIMREFLHCLRKQKLEELNEIQNDLQYIKEDINAVERQRVELYRARERYSVKLR
MLSDDPNVRSSWPSLMDKRNSSNMSIGKSVKGGQFWLGGGASQSRAAAADVEAPPITSQP
LQRKDAGSGADSQNTTQPGVAVARKRRVHAQFNDLQECYLHKRRYWAKHGQKQEEKDSNH
VQREGYHHHHPGLKDFQSVLSSFTRYSRLRVVAELRHGDLFHSANIVSSIEFDRDDEFFA
TAGVSRRIKVFDFASVVNEQEEMQCPIVEMSTRSKLSCLSWNKYTKSHIASSDYEGIVTV
WDVNTRQSIMEYEEHEKRAWSVDFSRTEPTMLVSGSDDCKVKIWCTKQEASALNIDMKAN
ICSVKYNPGSSFHIAVGSADHHIHYYDLRNISQPLHVFSGHRKAVSYVKFVSNTELASAS
TDNTLRLWDVKQNIPLRTFRGHTNEKNFVGLTVSNDYIACGSETNEVFVYHKDISRPAAW
HRFSSETNEGGGDDPGSYFISAVCWKTDSPTMLTANSQGTIKVLVLAA
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgggaggtggaggcggttcaatcggaggagcgattgtgccgtcggtgaagtccggactg
cctgcaccgtcatcggaactaccagctcctgctccgattccgccaccaccggtatatcag
ctacatccgccgcaagttccggcgtctgatcgcgcggtggtggaggcggaggttagggag
gatgatcgagaggcggaggaaacggataaagatttgctgtgtccgatatgcatgcagata
atcaaggatgcctttttgacatcatgtggtcatagtttctgttacttgtgcattgtgaca
catcttcagaacaagagcgactgtccttcttgcgcaagttatctcaccactaatcagatt
tttcctaattttttgcttaataagctattaatcaaagcttcagcaagccatatagccaaa
catgcttctcctactgaacagcttcgtcaagcacttcaacagggatgcaatgtttcagtc
aaggaggtggacatcctcttggttcttcttgctgaaaagaaaagaaaaatggagcaagaa
gaagccgagacaaatctgcaaattatgcgcgaatttttgcattgcttacgaaagcaaaag
cttgaagagctaaacgagatacaaaatgatcttcagtacattaaagaagacataaatgct
gtggagagacaaagagtagagctgtatagagcacgagaaagatactcagtaaaactaagg
atgctttctgatgatcctaatgtaagatcatcatggccttcattgatggacaaacgtaac
agcagcaatatgtctattggaaagagtgttaaaggaggccaattttggttgggtggaggt
gcttcacaaagtagggcagctgctgctgatgtggaagctcctcctataacctctcaacca
cttcaaagaaaggatgctggcagtggggcagattcacagaatactactcaaccaggagta
gctgtagcaagaaagaggcgtgttcatgcacagttcaacgacttgcaagagtgttacttg
cacaaacggagatattgggcaaaacatggtcagaagcaggaagaaaaggattctaatcat
gtacaaagagaaggttatcatcatcatcatccaggacttaaggattttcaatctgtgctt
tcttcttttacacgatacagtcggttacgggttgttgctgaacttaggcatggggatctt
ttccattcagccaatatcgtatcaagtatagagttcgatcgagacgatgaattttttgct
actgctggagtctcacgacgtatcaaggttttcgattttgcttctgtggtgaatgaacaa
gaagaaatgcagtgtcctatagtggaaatgtcaacgcgttccaaacttagttgtttgagc
tggaataagtacactaaaagccatatagcaagtagtgattatgagggcattgtgactgta
tgggatgtaaatactcgccagagtattatggagtatgaggagcatgagaaacgagcatgg
agcgttgatttctcacgcaccgaacctacaatgctagtttccggaagtgatgactgcaag
gtaaagatttggtgtacaaaacaagaagcatctgcccttaacattgacatgaaagcaaat
atctgttcagtcaagtacaatcccggatctagttttcatatcgcagtaggttcagcagat
caccacatccactattacgacttgagaaacataagtcaaccgttacacgtattcagtggc
caccgaaaagccgtttcatacgtaaaattcgtctccaacaccgagctcgcttctgcctct
acagacaacactttacgtttatgggacgtcaaacaaaacatcccattaagaacgtttaga
ggacacacgaacgagaagaattttgttggcctaactgtgagtaatgattacatagcttgt
ggcagtgagactaatgaagtttttgtgtaccacaaggatatttcgaggcctgcagcatgg
cataggtttagttctgagacaaatgaaggtgggggagatgaccctggatcatatttcatt
agtgctgtgtgttggaaaactgatagtccaactatgttgacagcaaatagtcaagggaca
atcaaggttcttgtccttgctgcgtag
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