Lactuca sativa (garden lettuce): 111890915
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Entry
111890915 CDS
T05352
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1 isoform X1
KO
K14411
RNA-binding protein Musashi
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111890915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111890915
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
111890915
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
SET1_RBD
Motif
Other DBs
NCBI-GeneID:
111890915
NCBI-ProteinID:
XP_023742751
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Position
7:17604027..17606497
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AA seq
420 aa
AA seq
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MDPGKLFIGGISWDTNEDSLREYFQTFGEVIEAVIMKDRITGRARGFGFVVFLNPVVAER
VVKEKHIIDGRTVEAKKAVPRDDQQTINRSNNGSIHGSPSPSQTSSKKIFVGGLAPTVSE
LDFKNYFDQFGIITDVVVMYDHNTQRPRGFGFITYKSEESVDKVLLKTFHELNGKMVEVK
RAVPKEISPGPIRNYGLSRVNSFVNGYNQRTDGRFSLVSGVRGGLPPFSLSNVGPNSDSG
LGTNYGGNGIVNSGVGYGRVLNINPMFSVGSNRYAMGGGGTGNESLISSLNHNIWSNGSQ
NYRNGSIGDSFAPGIGFGSNGAIWSNLDSDQGGVGGGGNSSFIGRNPIGYRRNGGNSITP
TSLYGEINGGGGGGGGGGDLFSVDPTWRPLSPELEVPGFFGYGFGNGSNRGISYMPSEVL
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atggaccctgggaagttgttcatcggtgggatttcatgggacaccaatgaagatagttta
agggaatattttcagactttcggtgaagtaattgaagccgtaatcatgaaggatcgaatc
acaggtcgtgctcgcgggtttggttttgtagtttttttaaaccctgttgtcgctgaaaga
gtcgtcaaggaaaaacatatcatagatggtagaacagtagaagcaaagaaagctgtccct
agggacgatcaacaaaccattaacaggagcaacaatggcagcattcatggttccccttcg
ccaagtcaaaccagtagcaaaaagattttcgtgggaggtttagcgccaacagtctcagaa
ctcgatttcaagaactattttgatcaattcgggataattacagacgtagtggtgatgtat
gatcacaacacccaaagacctcgaggttttggattcattacttataaatcagaagaatcc
gttgacaaagttttgctgaaaactttccatgaactcaatggtaaaatggtggaagtgaaa
cgtgcagttcctaaggagatatctccagggcctattcgtaattatggattaagtagagtt
aatagttttgttaatggatataaccaaagaacagatggtaggtttagtttagtgagtggt
gttcggggtggattaccaccgtttagcctatctaatgtgggacccaactctgattccggt
ttaggtacgaactatggagggaatggaattgttaattccggtgttgggtatgggcgtgtg
ttaaacataaaccctatgtttagtgtcggttcaaacagatatgccatgggaggtggtgga
accggaaatgaatctctcattagctcactaaatcacaacatatggagtaatgggagtcag
aattatagaaacggttcaattggtgattcctttgctcctggaattgggtttggtagtaat
ggagcgatttggagtaatcttgattccgatcaaggtggtgttggtggtggtgggaattct
agcttcattggtaggaatcctattggatacagaagaaatggtggtaatagcattacacca
acctctttgtatggtgagattaatggtggtggcggtggcggtggtggtggtggtgatttg
ttttctgttgaccccacatggcggccattgtcgcctgagcttgaagtacctggtttcttt
ggttatggttttggaaatggatcgaatagaggtatatcatacatgccaagtgaagtgtta
tga
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