Lactuca sativa (garden lettuce): 111890926
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Entry
111890926 CDS
T05352
Name
(RefSeq) transcription initiation factor IIF subunit alpha
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
111890926
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsv03021
]
111890926
Transcription machinery [BR:
lsv03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
111890926
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
111890926
NCBI-ProteinID:
XP_023742767
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All DBs
Position
7:18014757..18019804
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AA seq
549 aa
AA seq
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MSFDLMLKPSCDGCRSTVELYGSNCKHMTLCVTCGKTMAERKDKCRDCGTTITRLIREYN
VRASSASEKNYFIGRFVTGLPSFSKKKNDNKWSLQKEGLQGRQITDTLWEKFKNKPWLLE
DETGQFHYQGVLEGAQTATYYLLMLQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKIK
NRRKTADGYERWMMKAANNGAAAFGEVERPDDKEGGGGGGGGRGRKKNNADDDEGNVSDR
GEEDEDEEFARKNRLGLNKRGGDDDEEGPRGGDLDFDDDDIEKGDDWEHEEIFTDDDEAV
GNDPEEREDLLAPEIPAPPEIKQDEDDEEENEEQEGGLSQSGKELKKLLGKNNGVNDSEP
EQDDDDDDDDDIEDESSPVLAPKSNNAPSKRMNLPKEEPVDNSPSKTVSTGSARGTPNSS
KSSKGKRKSNDEAKPANGSKKVKTETEVKGVKEEPAKSSAPTKGASASKASAAGAPQTAS
TNTNTGPVTEDEIRAVLLHKAPVTTQDLVAKFKSRLRSKEDKSAFAEILRRISKIQKTNG
PSYVVLRDK
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtttgatttgatgctaaagccgtcgtgcgatggctgtagatcgacggtcgagttg
tacggtagcaactgcaagcacatgacgctgtgtgtgacttgtggcaaaaccatggctgag
aggaaggacaagtgccgtgactgtggcaccaccattactcgtctaattcgggaatacaat
gtccgggcgagctcagccagtgaaaagaattacttcataggaagatttgtgactggttta
ccgagtttctctaaaaagaaaaatgacaacaagtggtctcttcagaaagaaggattacaa
ggacgccaaatcacagacaccctatgggagaaatttaaaaataaaccttggcttttggag
gatgaaactggacaatttcattatcagggagttcttgagggtgcacaaacagcaacatac
taccttctaatgttacaggggaaagagtttgttgcaatccctgctggatcatggtacaac
ttcaacaaagttgcacaatacaagcaacttacacttgaggaagcagaagaaaagataaaa
aacagaaggaaaactgcagatgggtatgaaagatggatgatgaaagctgcaaacaacggg
gcggctgcttttggtgaagttgaaaggcctgatgacaaggaaggtggtggtggtggaggt
ggtggcagagggcgtaaaaagaataatgcagatgatgatgaagggaatgtgtcagataga
ggagaagaagatgaggatgaagagtttgcaaggaaaaatagacttggacttaataaaaga
ggaggtgatgatgatgaggaaggccctagaggtggtgatcttgattttgatgatgatgat
attgagaaaggtgatgactgggagcatgaggagattttcacagatgatgatgaagcagtt
ggtaatgatcctgaagagcgtgaagacttattagcccctgaaatccctgctcctcctgaa
atcaaacaggatgaagacgatgaggaagagaatgaagaacaggaaggaggactgagccaa
tctgggaaggagttaaagaagctgcttgggaaaaacaatggtgtcaatgattcagaacca
gaacaagatgatgatgatgacgatgatgatgatattgaagatgaaagttcccctgttctt
gcaccaaagtctaataacgcaccttcaaagcgtatgaatctaccaaaagaagaacccgtt
gataacagcccttcaaagacggtttccacagggtccgctcgtgggacccccaattcatcc
aagtcatcaaagggaaagaggaaaagcaatgacgaggctaagcctgcaaatggttcaaag
aaagtaaaaaccgaaactgaggtgaaaggtgtgaaggaagagcctgcaaaaagcagtgct
cccacaaaaggtgcatcggcttcaaaagcatcagcagcgggggccccacaaacagcatct
actaatactaatactgggccagtgacagaagatgaaattagagcagttttattgcacaag
gcacctgttactacacaggatcttgttgctaaatttaaatcccggctacgctccaaagag
gacaagagcgcgtttgctgaaatcttgaggaggatttccaagatacagaagacaaatggt
ccgagctatgtggtgttgagggacaaatga
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