Lactuca sativa (garden lettuce): 111891302
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Entry
111891302 CDS
T05352
Name
(RefSeq) exosome complex exonuclease RRP46 homolog
KO
K12590
exosome complex component RRP46
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111891302
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111891302
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
111891302
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
111891302
NCBI-ProteinID:
XP_023743131
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Position
1:complement(57999965..58001781)
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AA seq
243 aa
AA seq
DB search
MEVDRADGRAPNQRRPVACTRGILHRAHGSASWAQGDTKVIAAVYGPKAGTRKNENPEKA
CIEIIWKPKTGQSGKPEREYEMVMKKTLQSICLLNVHPNTTTSIVIQVVNDDGALLPCAI
NAACAALVDAGTPLKHLAIAICCCMSENGQILLDPSKIEEQKVKSFVYLVFPNSIASVLP
EGSLKSEGEIMEHGILTSVTHGVMTVDDYFSCLKLGRPAAAELSDFIRNNLKLKPGNDSS
KAA
NT seq
732 nt
NT seq
+upstream
nt +downstream
nt
atggaagttgatagagcagatgggcgggcccctaatcaacgaagaccggtggcctgtact
cgaggcatactccaccgtgctcatggctccgctagctgggctcaaggtgacacaaaggtt
attgctgctgtttatgggcccaaagctggaactaggaaaaacgaaaaccctgaaaaggcc
tgcattgaaatcatttggaaaccaaaaaccggacagagtgggaaaccagagagggaatat
gaaatggtgatgaagaagaccttacaaagcatctgcctcttgaatgttcatcccaataca
acaacttcaattgtcattcaagttgtcaatgatgatggtgctcttcttccatgtgcaata
aatgcagcttgtgctgctctagtagatgctgggactccattaaagcatcttgctattgca
atatgttgttgtatgtctgaaaatggtcaaattttacttgacccaagcaagattgaagaa
cagaaagtgaagtcatttgtatatttggtgttcccaaattctatagcttctgttcttccg
gaaggttcattaaaatcagaaggtgaaataatggaacatgggattcttacatccgtgaca
catggcgtaatgacagtggatgattatttcagctgtctaaaattgggacgccctgctgca
gctgaattgtctgattttatcagaaacaacttaaaattgaaacccgggaatgactcatct
aaagcagcttaa
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