Lactuca sativa (garden lettuce): 111891358
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Entry
111891358 CDS
T05352
Name
(RefSeq) LOW QUALITY PROTEIN: pectate lyase 1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv00040
Pentose and glucuronate interconversions
lsv01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
111891358
Enzymes [BR:
lsv01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
111891358
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
111891358
NCBI-ProteinID:
XP_023743176
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Position
3:69949808..69951514
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AA seq
426 aa
AA seq
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MRKYYFLLCITQALVFLVPVILARTSTFATTPNNADLEENTAKIPAKILTAKIANQTEGS
LPGSNSTRRDLHACQAANPIDKCWRCKPDWAENRQALADCALGFAKGTTGGKGGEIYEVT
DPSDDACDKPKEGTLRFGVTRDKPLWIIFTKDMVITLKHELVICNDKTIDGRGASVEIAN
GAGLTIGNVKNVIIHGIHIHHIKVTEGGVISDSETHSGQEQKNDGDGIYIYGSSKIWIDH
VTLNDGPDGLIDVTNAATCVTISNCKFTSHNKVMLLGADITHTQDKNMQVTVAYNKFGEG
CIQRLPRCRYGFFQVVNNDYNKWQMYAIGGSSDPTILSQGNRFLAPDVAKSKQVTQRHDA
PEEEWKNWKWKSQNDTFLNGAFFVPSGGEWEPTPEQSAGLIPPCPEPVEALTCDAGKLTC
TPGQPC
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaatattatttcttactttgtattacccaagccttagtttttttggtgccggtt
atattagctcggacatccaccttcgcaaccacacccaacaatgcagatttagaagagaat
acagctaaaatccctgcgaagatccttacagcaaagatcgccaatcaaaccgaaggatct
ttacccggatcaaattcaacaaggagggacctgcatgcttgtcaagcagcaaacccaata
gacaagtgctggaggtgcaaacccgattgggcagaaaatcgtcaagcattagcagattgc
gcccttggttttgcaaaaggaacaacaggtggcaaaggtggtgaaatctatgaggtgact
gatccttcggatgacgcttgtgacaaaccaaaggaagggacacttcgttttggagttacg
agagacaaacctttatggatcatcttcaccaaagatatggtgatcacgctgaaacatgag
ctcgtgatatgtaatgacaagacaattgatggtaggggtgcctctgtcgagattgctaat
ggtgcaggtcttacaattgggaatgtcaagaatgtcattattcatggaatccatatccac
catataaaagtaacggaaggtggtgtgattagtgattcagagacacattctgggcaagag
caaaaaaacgatggtgatggtatctatatttatggttcttccaagatatggatcgaccat
gtgacactcaatgatggcccggatggacttatagatgtcacaaacgccgccacttgtgta
accatttccaactgcaaattcaccagtcataacaaagtcatgttgctaggggcagatata
acacatactcaagacaaaaatatgcaagtcactgtcgcatacaataagtttggagaagga
tgtatccaaagactacctaggtgtcgatatggttttttccaggtagttaacaatgactat
aacaaatggcaaatgtatgctattggtgggagtagtgaccctactatcttgagccaaggc
aaccgttttttggctcctgatgtggctaaatcgaaacaggtgacacaaaggcatgatgcc
cctgaggaagagtggaagaactggaaatggaaatcgcaaaatgacactttcctaaatgga
gcctttttcgtaccatcaggtggtgagtgggaaccaacccctgaacagagcgccggtctg
attccaccttgccctgaacctgttgaggcactcacttgtgatgctggcaaactcacatgc
acgcctggccagccttgttaa
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