Lactuca sativa (garden lettuce): 111891701
Help
Entry
111891701 CDS
T05352
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7
KO
K14409
protein SMG7
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111891701
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111891701
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
111891701
mRNA cycle factors
Common to processing body (P body) and stress granule
111891701
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Piezo_THU9_anchor
Motif
Other DBs
NCBI-GeneID:
111891701
NCBI-ProteinID:
XP_023743535
LinkDB
All DBs
Position
5:complement(324747907..324753069)
Genome browser
AA seq
902 aa
AA seq
DB search
MTIPMNNTVSNLSRDRAQLLYNKNVELESKRRKAAQAKIPSDPNAWQQMRENYESILLED
HVFSEQHDIEYALWQLHYKRIEELRAHYSAAQAQNTKGPAPAPARPGPARITKIRSQFKT
FLSEATGFYHDLMVKIRAKYGLSLGHISDDPQNDVDMKKGLISCHRCFIYLGDLARYKGL
YGEGDSKTRDFAAASSYYKQAATLWPSSGNPHHQLAILASYSGDELLAVYRYFRSLAVDT
PFTTARDNLIIAFEKNRQSYCQLLGDSKAAPNKKAPARVPGKGRNKGETWVSSKDRKTEP
NLVVERESTTMPETLKAFSIRFVRLNGILFTRTSLETFLEVFSVARSDFLQLLSSGQDEV
FNFGSDYEQCKLFITRFIAIMIFTVYNVNKKETEHQSYAEILQRSVVLQNAFAAIFDFMA
LILERCIQLNDPCASFLLPGIMIFVEWLVSCKEDLASTNEMEEKQVAARSLFWNQFVSFL
NKLLIVSQVVNESGDETRLALPEDMELRGFLPLVSGQLVLDFTRTNYLDENKEKKARVQR
IVAAGKALTNNSKNVGVGKQQQGFYFDSKSKQFLFGVEPQNNNQVSTENIGEKLECEEEE
DDEVIVFKPSVPEKHTHTHTHTDTDGLVFPSKLIDNPAPVAVSMPPHEACASSVNENMVQ
DSQLEQPEEFIENGLFSNLNLLGGKEFEKHSGGMSSVGFQDSESIIIPSKFDSVMTSAAP
SFGSVPSKAKPIKSPVSRPIRHYGPPPGFNNTVGTQPQPLYGVNLRNGIGNENQPVDDYS
WLDGYQLPYSGYNNGIGIGNSWRCLPQPNKLLNTRKMPLGMESFPFPGKQVSSVAEAENG
IQKQQNGNGGWVGGYQIPTERGNGNLQEAMQQQHQVKKGNEEFIALPQQYQGQSLWEGRF
FV
NT seq
2709 nt
NT seq
+upstream
nt +downstream
nt
atgactattccaatgaataacactgtgagtaatttgtcaagggatcgagctcaacttctt
tacaacaagaatgttgagttggaaagtaagcgtagaaaagcagcacaagcaaaaatccca
tcagatccaaatgcatggcaacaaatgcgagaaaattacgaatctatccttcttgaagac
catgtcttctctgaacaacatgacattgaatatgctctatggcagttgcattacaaacgc
attgaggagttgcgggcacactacagtgctgcccaagcacaaaacacaaaaggtcccgcc
cctgcccctgcccgaccagggcctgcccgaatcactaaaatccgttcccaattcaagacc
tttctttctgaagctactggattttaccatgatttgatggtgaaaattagggcaaaatac
gggttgtctttaggtcatatttcagatgatccacaaaatgatgttgacatgaagaaaggc
ttgatatcatgccatagatgctttatttaccttggagaccttgctcgctataaagggtta
tatggtgaaggtgattcaaaaacacgtgattttgctgcagcttcaagttactataagcaa
gctgctactctttggccttcaagtggcaatcctcatcatcagcttgctattcttgcatcc
tattctggagatgaacttttggctgtttaccgttattttcgaagtttagcagttgatacc
ccttttactactgcaagagacaatttaattattgcatttgagaagaatcgtcaaagctac
tgccagcttcttggagattcaaaagctgcccctaacaagaaagcaccagcccgggtgccc
gggaaaggaagaaacaaaggtgaaacatgggtttcatcaaaagataggaaaacagaacca
aatcttgttgttgaaagagaatctactacaatgcctgaaactcttaaagccttcagtatt
cgatttgtcagactaaatggcatcctttttactcgcacaagtttggagacttttttggaa
gttttctcagtggcgaggagtgattttcttcagctactatcatccggacaagatgaggtg
ttcaattttggttcagattatgagcagtgtaaactcttcataaccagattcatagcaatc
atgatattcactgtctacaatgtaaacaaaaaggaaacagaacaccaatcatacgcagag
attcttcaacgttctgttgtccttcaaaacgcatttgctgcaatattcgatttcatggca
ctcatacttgaaagatgcatccagttaaacgacccatgtgcaagctttttactccctgga
atcatgatttttgttgaatggcttgtttcttgtaaagaggatttagcatccacaaatgaa
atggaggagaaacaggttgctgctagatccttattttggaaccaatttgtttcttttctc
aacaagcttttgattgtgtctcaagtggttaatgaaagtggagatgaaactcgtcttgca
ttgcctgaagacatggaattgaggggcttccttccacttgtttctggtcaactcgttctt
gactttacaagaacaaattatttggatgaaaataaggaaaagaaggcacgcgtacaacgg
attgtagctgctggaaaggctcttaccaataatagtaagaatgttggtgttgggaagcaa
cagcaaggattctattttgattctaaatccaaacagtttctctttggtgttgagccacaa
aataacaaccaagtttccactgaaaacattggagaaaaattagaatgtgaagaggaggaa
gatgatgaggttattgtcttcaaaccctctgtacctgagaaacatacacatacacataca
catacagatacagatggtttggtgtttccttcaaaacttattgacaatcctgcccctgtg
gctgtctcaatgccaccacatgaagcatgtgcatcttctgtcaatgaaaacatggtgcag
gattcgcaacttgaacaaccagaagaatttattgaaaatggtttgttttcaaatctcaac
ttgttgggaggaaaagaatttgaaaaacattcaggaggaatgtcgtctgttggtttccag
gattctgaaagtattatcataccatccaagtttgattcggtgatgacatcagcagcacct
agttttggcagcgttccttcaaaggcaaagcccattaagagtccagtgagccggcccata
cgacattatgggccaccacctggattcaacaacactgttggtactcagcctcagccactg
tatggtgttaacctaaggaatggaattggaaatgaaaatcaacctgtggatgattatagc
tggttagatgggtaccagttaccttattctggatacaacaatggaattggaatcggtaat
tcctggaggtgtttgccgcaaccaaacaagcttttgaacacaaggaagatgccgttggga
atggaaagctttccattccctggtaaacaagtttcctctgtggctgaggctgagaatgga
atacagaaacaacagaatggtaatggtggatgggttggtggttatcagattccaacagaa
cgtgggaatgggaatctacaagaagcaatgcagcagcagcatcaagttaaaaaagggaat
gaagagtttattgcactgcctcagcaataccagggacaatcgttgtgggaaggtcgtttc
tttgtgtga
DBGET
integrated database retrieval system
